Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS20160 and BWI76_RS20165 overlap by 4 nucleotidesBWI76_RS20165 and BWI76_RS20170 are separated by 32 nucleotidesBWI76_RS20170 and BWI76_RS20175 overlap by 4 nucleotidesBWI76_RS20175 and BWI76_RS20180 are separated by 2 nucleotides BWI76_RS20160: BWI76_RS20160 - NADH-quinone oxidoreductase subunit H, at 4,223,397 to 4,224,374 _RS20160 BWI76_RS20165: BWI76_RS20165 - NADH-quinone oxidoreductase subunit G, at 4,224,371 to 4,227,097 _RS20165 BWI76_RS20170: BWI76_RS20170 - NADH-quinone oxidoreductase subunit F, at 4,227,130 to 4,228,467 _RS20170 BWI76_RS20175: BWI76_RS20175 - NADH-quinone oxidoreductase subunit E, at 4,228,464 to 4,228,964 _RS20175 BWI76_RS20180: BWI76_RS20180 - NADH-quinone oxidoreductase subunit C/D, at 4,228,967 to 4,230,763 _RS20180
Group Condition BWI76_RS20160 BWI76_RS20165 BWI76_RS20170 BWI76_RS20175 BWI76_RS20180
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB -7.1 -7.6 -7.5 N.D. -6.0
rhizosphere rhizosphere sample 1; outgrowth in LB -5.8 -3.0 -5.3 N.D. -4.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -6.1 -2.2 -6.6 N.D. -3.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -6.4 -2.9 -3.5 N.D. -3.7
carbon source acetate (C) -3.2 -2.6 -3.2 N.D. -5.0
carbon source acetate (C) -4.8 -2.6 -3.1 N.D. -3.5
carbon source succinate (C) -5.4 -2.8 -3.3 N.D. -2.4
carbon source L-Glutamine (C) -2.5 -2.7 -3.4 N.D. -2.8
carbon source D-Lactate (C) -2.9 -1.8 -3.0 N.D. -3.2
carbon source succinate (C) -3.1 -2.7 -2.8 N.D. -2.0
carbon source D,L-Malic Acid (C) -2.7 -2.2 -2.8 N.D. -2.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -5.7 -1.0 -1.3 N.D. -1.2
supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -2.3 -2.0 -3.0 N.D. -1.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.7 -4.1 -1.1 N.D. -1.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -3.9 -1.9 -1.2 N.D. -1.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -2.1 -1.8 N.D. -4.1
carbon source 2'-Deoxycytidine 5 mM (C) -3.1 -1.7 -2.2 N.D. -1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.2 -1.4 -3.1 N.D. -1.6
carbon source D-Lactate (C) -1.8 -2.0 -2.3 N.D. -2.0
mixed community LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL -5.3 -0.5 -0.6 N.D. -1.6
carbon source D,L-Malic Acid (C) -1.5 -2.0 -2.5 N.D. -1.5
carbon source D-Alanine (C) -2.5 -1.2 -1.8 N.D. -1.9
mixed community LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL -5.2 -0.8 -1.6 N.D. +0.3
carbon source 2'-Deoxycytidine 5 mM (C) -2.1 -1.0 -2.3 N.D. -1.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.3 -0.7 -2.9 N.D. -1.8
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -1.4 -1.5 -1.7 N.D. -2.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.9 -1.7 N.D. -2.3
carbon source Gly-Glu (C) +0.7 +1.0 -2.2 N.D. -2.7
stress Sisomicin 0.008 mg/ml +5.6 +5.9 +5.9 N.D. +6.0
stress Sisomicin 0.008 mg/ml +6.6 +7.7 +7.2 N.D. +7.5
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