Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS19870 and BWI76_RS19875 are separated by 279 nucleotidesBWI76_RS19875 and BWI76_RS19880 overlap by 38 nucleotidesBWI76_RS19880 and BWI76_RS19885 are separated by 168 nucleotidesBWI76_RS19885 and BWI76_RS19890 are separated by 76 nucleotides BWI76_RS19870: BWI76_RS19870 - malate:quinone oxidoreductase, at 4,153,664 to 4,155,298 _RS19870 BWI76_RS19875: BWI76_RS19875 - sulfate transporter, at 4,155,578 to 4,156,825 _RS19875 BWI76_RS19880: BWI76_RS19880 - magnesium transporter, at 4,156,788 to 4,158,224 _RS19880 BWI76_RS19885: BWI76_RS19885 - multidrug ABC transporter permease/ATP-binding protein, at 4,158,393 to 4,160,036 _RS19885 BWI76_RS19890: BWI76_RS19890 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 4,160,113 to 4,160,763 _RS19890
Group Condition BWI76_RS19870 BWI76_RS19875 BWI76_RS19880 BWI76_RS19885 BWI76_RS19890
nitrogen source Thymine (N) -4.8 N.D. -0.1 -0.6 -1.1
nitrogen source L-tyrosine (N) -5.0 N.D. -0.2 -0.8 -0.4
supernatant control Vogels_fungal_media; pH 5.5 -4.0 N.D. -0.2 -0.1 +0.1
nitrogen source L-Arginine (N) -4.8 N.D. -0.2 +0.3 +0.4
nitrogen source L-Proline (N) -4.2 N.D. +0.0 -0.1 +0.3
exudates RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x -2.9 N.D. -0.4 -0.3 +0.1
stress Paraquat dichloride 0.1 mg/ml -1.5 N.D. -0.2 -0.3 -1.1
stress Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL -4.2 N.D. +0.7 +0.2 +0.6
mixed community RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x -2.4 N.D. -0.4 -0.2 +0.4
mixed community RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x -3.3 N.D. -0.1 -0.1 +1.0
nitrogen source L-Phenylalanine (N) -3.1 N.D. +0.2 -0.1 +0.7
micoeukaryotes Tetrahymena sp., Mixed culture-1 -3.0 N.D. +0.6 +0.5 -0.1
nitrogen source L-Cysteine (N) -2.3 N.D. -0.0 +0.6 -0.3
nitrogen source nitrate (N) -1.5 N.D. +0.2 -1.2 +0.6
carbon source RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x -1.9 N.D. -0.4 +0.1 +0.8
mixed community LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL -1.6 N.D. +0.3 -0.8 +0.7
stress Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM -2.2 N.D. +0.6 -0.2 +0.7
exudates RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x +1.2 N.D. -0.8 -0.7 +0.6
stress Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL -0.7 N.D. +1.7 -0.7 +0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 N.D. -0.1 +1.6 +0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 N.D. +1.9 -0.6 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.3 N.D. -0.4 +0.3 +1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 N.D. -0.3 +1.0 +1.9
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.6 N.D. +1.1 +0.4 +1.0
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.7 N.D. -0.1 +1.8 +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 N.D. +1.2 -0.0 +1.6
stress Nickel (II) chloride 1.5 mM +0.3 N.D. +5.1 -0.2 -0.4
stress Nickel (II) chloride 1.5 mM +0.3 N.D. +5.5 -0.6 +0.1
stress Cobalt chloride 0.5 mM +1.7 N.D. +10.6 -0.8 -0.6
stress Cobalt chloride 0.5 mM +2.0 N.D. +10.8 +0.2 -0.7
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