Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS19745 and BWI76_RS19750 are separated by 148 nucleotidesBWI76_RS19750 and BWI76_RS19755 are separated by 316 nucleotidesBWI76_RS19755 and BWI76_RS19760 are separated by 119 nucleotidesBWI76_RS19760 and BWI76_RS19765 are separated by 41 nucleotides BWI76_RS19745: BWI76_RS19745 - zinc/iron-chelating domain-containing protein, at 4,128,264 to 4,128,518 _RS19745 BWI76_RS19750: BWI76_RS19750 - elongation factor P-like protein YeiP, at 4,128,667 to 4,129,239 _RS19750 BWI76_RS19755: BWI76_RS19755 - fructuronate reductase, at 4,129,556 to 4,131,022 _RS19755 BWI76_RS19760: BWI76_RS19760 - GTP-binding protein, at 4,131,142 to 4,132,119 _RS19760 BWI76_RS19765: BWI76_RS19765 - membrane protein, at 4,132,161 to 4,132,868 _RS19765
Group Condition BWI76_RS19745 BWI76_RS19750 BWI76_RS19755 BWI76_RS19760 BWI76_RS19765
supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. -1.2 +0.0 -0.2 -0.8
phage KLEB20 MOI 0.1 N.D. -0.5 -0.2 -0.6 -0.7
supernatant RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x N.D. -0.3 -0.2 -0.5 -0.9
phage KLEB31 MOI 1 N.D. -1.5 +0.3 -0.3 -0.1
phage KLEB30 MOI 1 N.D. -0.9 +0.7 -0.5 -0.6
stress Sisomicin 0.008 mg/ml N.D. -1.2 -0.2 +0.5 -0.4
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. -0.4 +0.4 -0.6 -0.5
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM N.D. +0.6 -0.4 -0.0 -1.1
nitrogen source D-Serine (N) N.D. +0.7 -0.1 -1.0 -0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM N.D. +0.9 -0.4 -0.5 -0.4
supernatant RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x N.D. +0.7 +0.1 -0.6 -0.6
nitrogen source L-tyrosine (N) N.D. +0.8 -0.6 -0.1 -0.5
phage KLEB15 MOI 10 N.D. +0.9 -0.5 -0.3 -0.5
phage KLEB17 MOI 1 N.D. +0.7 +0.4 +0.0 -1.4
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x N.D. -1.1 +0.6 +0.0 +0.3
stress Paraquat dichloride 0.1 mg/ml N.D. +0.9 -0.3 -0.5 -0.3
ecofab LB in EcoFAB_10mL N.D. -0.7 -0.3 +0.9 -0.0
stress Chloramphenicol 0.001 mg/ml N.D. +0.4 +0.6 -0.4 -0.8
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x N.D. +0.8 +0.3 -0.3 -0.8
phage K. M5a1 KLEB22 MOI 10 N.D. +0.6 -0.7 +0.6 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.0 +0.2 +0.7 +0.5
phage KLEB20 MOI 0.1 N.D. +0.7 -0.1 +0.5 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.0 -0.3 +2.0 -0.6
nitrogen source Cytosine (N) N.D. +1.3 -0.0 -0.5 +0.4
nitrogen source nitrate (N) N.D. +1.3 -0.3 +0.4 +0.0
nitrogen source L-Arginine (N) N.D. +1.1 +0.3 -0.3 +0.3
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x N.D. +0.8 -0.3 +0.9 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.4 +1.0 +0.4 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +2.7 -0.5 +0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +1.2 +0.9 +0.1 +0.2
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