Fitness for 5 genes in Klebsiella michiganensis M5al

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BWI76_RS18685	BWI76_RS18690	BWI76_RS18695	BWI76_RS18700	BWI76_RS18705
mixed community	RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.3	-0.0	-1.8	-0.4	-0.7
nitrogen source	L-Arginine (N)	-0.2	-0.1	-1.8	-0.8	-0.1
stress	Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM	+0.0	-0.4	-1.5	-0.5	-0.4
rhizosphere	rhizosphere EcoFAB sample 3; outgrowth in LB	-0.1	-0.6	-0.7	-0.6	-0.7
mixed community	LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL	-0.2	+0.0	-1.8	-0.3	-0.4
exudates	RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x	+0.0	-0.2	-2.1	+0.0	+0.1
mixed community	RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	+0.1	-0.1	-1.1	-0.5	-0.5
mixed community	RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	-0.3	-0.3	-0.9	-0.4	-0.2
mixed community	LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL	-0.2	-0.1	-1.5	-0.0	-0.2
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and Iron (II) 0.002 mg/ml	-0.0	-0.2	-1.4	-0.2	-0.2
stress	Fungal_growth_media_mCAFEs_v1 with Phosphomycin 0.01 mg/mL	+0.1	-0.3	-1.0	-0.3	-0.5
phage	KLEB17 MOI 1	-0.0	-0.1	-1.0	-0.4	-0.4
supernatant	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x	-0.1	-0.1	-0.8	-0.8	-0.0
mixed community	LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL	-0.1	-0.1	-0.8	-0.6	-0.3
mixed community	RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	+0.1	-0.1	-1.2	-0.2	-0.4
mixed community	RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.1	-0.2	-0.7	-0.5	-0.2
phage	KLEB1 MOI 10	-0.3	+0.1	-1.8	+0.2	+0.0
mixed community	LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	+0.1	-0.2	-1.4	-0.2	-0.1
phage	K. M5a1 KLEB22 MOI 10	-0.2	+0.1	-1.5	+0.1	-0.2
mixed community	RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.2	+0.0	-0.7	-0.7	-0.2
nitrogen source	Putrescine (N)	+0.1	-0.1	-1.4	-0.1	-0.1
mixed community	RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	+0.2	-0.2	-1.0	-0.4	-0.1
nitrogen source	D-Alanine (N)	+0.0	+0.1	-1.9	+0.1	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	-0.0	-1.2	+0.2	-0.3
nitrogen source	nitrate (N)	+0.2	-0.1	-0.9	+0.3	-0.2
nitrogen source	Gly-DL-Asp (N)	-0.2	-0.1	-0.8	+0.4	+0.5
mixed community	Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	+0.2	-0.1	+0.7	-0.4	-0.5
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.2	-0.2	+1.1	-0.0	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.2	+1.0	-0.2	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.2	+0.8	+0.4	-0.1