Fitness for 5 genes in Klebsiella michiganensis M5al

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BWI76_RS17830	BWI76_RS17835	BWI76_RS17840	BWI76_RS17845	BWI76_RS17850
nitrogen source	Uridine (N)	+0.3	-1.5	-0.0	-0.5	-0.4
phage	K. M5a1 KLEB23 MOI 10	+0.0	+0.2	-0.5	-0.6	-0.6
nitrogen source	D-Alanine (N)	-0.1	-0.8	-0.3	-0.4	+0.2
nitrogen source	Gly-DL-Asp (N)	-0.1	-0.6	+0.2	+0.2	-0.9
nitrogen source	Glucuronamide (N)	-0.2	+0.5	-0.7	-0.5	+0.0
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x	+0.2	+0.5	-0.9	-0.2	-0.3
mixed community	LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	+0.5	-1.2	+0.0	+0.0	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	-0.2	-0.5	-0.4	+0.3
nitrogen source	L-Arginine (N)	-0.2	+0.7	-0.8	-0.2	+0.5
phage	KLEB1 MOI 10	-0.2	-0.7	+0.6	+0.6	-0.2
rhizosphere	rhizosphere EcoFAB sample 3; outgrowth in LB	+0.7	-0.2	+0.6	-0.4	-0.6
mixed community	RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	+0.4	+0.3	-0.6	-0.2	+0.4
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM	+0.4	-0.0	-0.3	-0.4	+0.6
mixed community	RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.5	-0.3	+0.2	+0.5	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.8	+0.3	-0.3	-0.3	+0.2
micoeukaryotes	Tetrahymena sp., Mixed culture-1	-0.6	-0.1	+0.7	+0.5	+0.3
phage	KLEB17 MOI 1	+0.4	+0.4	+0.2	+0.3	-0.6
mixed community	RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	+0.3	+0.2	-0.5	+0.5	+0.4
phage	K. M5a1 KLEB26 MOI 0.1	+0.5	+0.3	-0.6	-0.1	+0.7
phage	KLEB13 MOI 0.1	+0.3	+1.0	-0.6	+0.2	+0.0
supernatant	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml	+0.5	+0.2	-0.3	-0.2	+0.7
nitrogen source	L-Serine (N)	+0.2	+0.6	+0.4	+0.3	-0.5
exudates	RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x	+0.0	+0.8	+0.0	-0.8	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	+1.3	+0.2	+0.1	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.2	+1.2	-0.1	+0.1
supernatant	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x	+0.8	+0.4	-0.1	+0.1	+0.6
phage	KLEB17 MOI 1	+0.6	+0.2	+0.9	+0.5	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.1	+0.8	+0.4	-0.6	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.9	+0.2	+0.2	+0.5	+0.3
mixed community	LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	+0.9	+0.5	+0.2	+0.3	+0.5