Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS15995 and BWI76_RS16000 are separated by 105 nucleotidesBWI76_RS16000 and BWI76_RS16005 overlap by 14 nucleotidesBWI76_RS16005 and BWI76_RS16010 are separated by 30 nucleotidesBWI76_RS16010 and BWI76_RS16015 are separated by 171 nucleotides BWI76_RS15995: BWI76_RS15995 - bifunctional diguanylate cyclase/phosphodiesterase, at 3,317,179 to 3,319,335 _RS15995 BWI76_RS16000: BWI76_RS16000 - multidrug transporter subunit MdtI, at 3,319,441 to 3,319,770 _RS16000 BWI76_RS16005: BWI76_RS16005 - multidrug transporter subunit MdtJ, at 3,319,757 to 3,320,119 _RS16005 BWI76_RS16010: BWI76_RS16010 - hypothetical protein, at 3,320,150 to 3,320,473 _RS16010 BWI76_RS16015: BWI76_RS16015 - pheromone autoinducer 2 transporter, at 3,320,645 to 3,321,679 _RS16015
Group Condition BWI76_RS15995 BWI76_RS16000 BWI76_RS16005 BWI76_RS16010 BWI76_RS16015
nitrogen source Glucuronamide (N) +0.0 -3.5 +0.1 +0.0 -0.5
phage ER37 +0.2 -1.7 -0.2 -0.6 -1.4
phage ER26 +0.3 -3.5 +0.0 -0.2 -0.2
phage KP5_E1_R2_1 -0.0 -3.8 +0.1 +0.3 +0.3
nitrogen source L-Lysine (N) -0.5 -1.6 -0.0 -0.5 -0.4
phage Roth35v2 -0.4 -1.5 -0.5 +0.0 -0.4
ecofab RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL +0.2 -1.8 -0.1 +0.2 -0.8
supernatant control Vogels_fungal_media; pH 5.5 +0.5 -2.1 +0.1 +0.2 -0.5
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.2 -1.4 +0.5 -0.6 +0.2
nitrogen source Glucuronamide (N) +0.2 -1.8 -0.2 +0.1 +0.6
phage K. M5a1 KLEB23 MOI 1 +0.4 -1.1 +0.1 +0.6 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 -1.2 +0.4 +0.5 -0.7
phage KLEB29 MOI 1 +0.4 -1.2 -0.3 -0.4 +0.9
phage KLEB1 MOI 0.1 +0.0 -2.1 +0.2 +0.4 +0.8
mixed community RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.1 -0.7 +0.2 -1.0 +0.8
carbon source Inosine (C) +0.0 -1.7 +0.3 -0.1 +1.1
nitrogen source nitrate (N) +0.6 -1.4 +0.3 +0.3 +0.6
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL +0.5 +0.8 +0.4 -0.5 -0.7
mixed community Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL -0.2 +0.9 +0.3 -0.8 +0.8
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml -0.2 +0.9 +0.4 -0.6 +0.8
mixed community RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x -0.1 +0.7 -0.1 -0.4 +1.4
nitrogen source L-tyrosine (N) +0.1 +1.3 +0.1 -0.4 +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 +2.6 +0.0 +0.2 -0.5
phage KP2_E1_R2_1 -0.1 +1.8 +0.1 -0.1 +0.9
stress Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL +0.3 +1.2 -0.1 -0.7 +1.9
phage KP2_E1_R2_2 -0.1 +1.9 +0.1 +0.4 +0.4
phage RM14 +0.4 +0.8 +0.2 +0.6 +0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +1.4 +0.8 +0.3 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 +5.0 +0.8 +0.2 -0.1
carbon source Gly-Glu (C) +2.8 +0.9 +0.6 +0.3 +2.0
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