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Fitness for 5 genes in
Klebsiella michiganensis M5al
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BWI76_RS15380 and BWI76_RS15385 are separated by 144 nucleotides
BWI76_RS15385 and BWI76_RS15390 are separated by 145 nucleotides
BWI76_RS15390 and BWI76_RS15395 are separated by 27 nucleotides
BWI76_RS15395 and BWI76_RS15400 are separated by 593 nucleotides
BWI76_RS15380: BWI76_RS15380 - hypothetical protein, at 3,222,789 to 3,223,277
_RS15380
BWI76_RS15385: BWI76_RS15385 - hypothetical protein, at 3,223,422 to 3,223,700
_RS15385
BWI76_RS15390: BWI76_RS15390 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, at 3,223,846 to 3,224,877
_RS15390
BWI76_RS15395: BWI76_RS15395 - DUF1852 domain-containing protein, at 3,224,905 to 3,225,882
_RS15395
BWI76_RS15400: BWI76_RS15400 - anti-RssB factor, at 3,226,476 to 3,226,787
_RS15400
Group
Condition
BWI76
_RS15380
BWI76
_RS15385
BWI76
_RS15390
BWI76
_RS15395
BWI76
_RS15400
rhizosphere
rhizosphere EcoFAB sample 3; outgrowth in LB
-0.4
-0.1
-0.6
-0.8
-1.2
phage
K. M5a1 KLEB26 MOI 0.1
-0.1
-0.7
-0.7
-0.1
-1.0
mixed community
RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
-0.2
-0.1
-0.5
-0.2
-1.2
mixed community
RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
-0.2
+0.1
-0.5
-0.5
-0.9
agar plate interaction
Taped volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.2
-0.7
-0.2
-0.8
mixed community
RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
-0.0
-0.1
-0.2
-0.2
-1.1
stress
Fungal_growth_media_mCAFEs_v1 with Phosphomycin 0.01 mg/mL
-0.0
+0.1
-0.6
-0.5
-0.5
mixed community
LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
+0.1
-0.4
-0.6
-0.1
-0.6
phage
KLEB17 MOI 1
-0.5
-0.2
-1.6
-0.1
+0.7
mixed community
RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
-0.5
-0.2
-0.4
-0.3
-0.1
stress
RCH2_defined_1percent_glucose with Chloride 200 mM and Betaine 100 uM
-0.0
-0.5
-0.5
-0.1
-0.4
stress
RCH2_defined_1percent_glucose with Chloride 600 mM
+0.2
-0.5
+0.2
-0.3
-1.0
stress
Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
-0.0
-0.1
-0.5
-0.3
-0.5
mixed community
RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
-0.2
-0.1
-0.4
-0.1
-0.6
nitrogen source
Thymine (N)
-0.3
+0.2
-0.5
-0.2
-0.3
phage
K. M5a1 KLEB23 MOI 10
+0.2
+0.3
-0.8
+0.0
-0.8
ecofab
RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL
-0.4
+0.3
-0.3
-0.1
-0.4
mixed community
RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
+0.2
+0.1
-0.4
-0.2
-0.5
stress
Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
-0.0
+0.5
-0.1
-0.0
-1.0
mixed community
RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
+0.4
+0.1
-0.4
-0.3
-0.4
phage
KLEB17 MOI 1
-0.1
-0.3
-0.7
+0.2
+0.4
phage
KLEB1 MOI 0.1
-0.4
+0.6
-0.5
+0.1
+0.1
stress
Chloramphenicol 0.001 mg/ml
+0.2
+0.5
-0.5
+0.0
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
+0.2
+0.4
+0.2
+0.3
-0.5
nitrogen source
Cytosine (N)
+0.4
+0.4
+0.3
-0.1
-0.4
micoeukaryotes
Tetrahymena sp., Mixed culture-1
-0.3
+0.7
+0.5
-0.2
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
-0.2
+0.7
+0.4
-0.0
+0.2
stress
Paraquat dichloride 0.1 mg/ml
-0.2
+1.0
-0.5
+0.4
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.3
+0.2
-0.1
+0.2
+0.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
+0.3
+0.4
+0.4
+0.4
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