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Fitness for 5 genes in
Klebsiella michiganensis M5al
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BWI76_RS14995 and BWI76_RS15000 are separated by 8 nucleotides
BWI76_RS15000 and BWI76_RS15005 are separated by 335 nucleotides
BWI76_RS15005 and BWI76_RS15010 are separated by 71 nucleotides
BWI76_RS15010 and BWI76_RS15015 are separated by 41 nucleotides
BWI76_RS14995: BWI76_RS14995 - amino acid ABC transporter permease, at 3,141,755 to 3,142,453
_RS14995
BWI76_RS15000: BWI76_RS15000 - amino acid ABC transporter ATP-binding protein, at 3,142,462 to 3,143,202
_RS15000
BWI76_RS15005: BWI76_RS15005 - hypothetical protein, at 3,143,538 to 3,143,747
_RS15005
BWI76_RS15010: BWI76_RS15010 - hypothetical protein, at 3,143,819 to 3,144,007
_RS15010
BWI76_RS15015: BWI76_RS15015 - DUF2132 domain-containing protein, at 3,144,049 to 3,144,324
_RS15015
Group
Condition
BWI76
_RS14995
BWI76
_RS15000
BWI76
_RS15005
BWI76
_RS15010
BWI76
_RS15015
supernatant
Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
-0.3
-1.3
+0.1
-0.6
-5.0
phage
K. M5a1 KLEB26 MOI 0.1
+0.5
-0.3
-0.5
-0.0
-5.0
stress
Cobalt chloride 0.5 mM
-0.5
-0.2
+0.4
+0.4
-5.1
mixed community
LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
-0.4
-1.4
+0.0
-0.4
-2.8
phage
K. M5a1 KLEB23 MOI 1
-0.4
-0.5
+0.1
+0.1
-3.5
mixed community
RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
-0.2
-1.1
-0.1
-0.3
-2.3
phage
KLEB30 MOI 1
-0.7
-0.1
+0.0
-0.3
-2.8
mixed community
RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
-0.1
-0.1
+0.1
-0.6
-2.7
mixed community
RCH2_defined_noCarbon with Mixed culture; Escherichia coli BW25113 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
-0.2
-2.2
-0.3
-0.4
-0.2
mixed community
LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
-0.4
-0.5
-0.3
-0.1
-2.0
mixed community
Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
-0.0
-1.4
+0.1
-0.3
-1.7
stress
Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
-0.4
-0.5
-0.4
+0.1
-2.0
supernatant
Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
-0.7
-1.6
-0.1
-0.7
+0.1
agar plate interaction
Taped volatile agar plate with Trichoderma atroviridae IMI
-0.5
-1.9
-0.3
-0.0
-0.0
stress
Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL
-0.2
-0.3
-0.1
-0.4
-1.8
mixed community
LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
-0.2
-2.6
+0.0
-0.0
+0.1
mixed community
RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
+0.1
-0.9
-0.1
-0.2
-1.7
mixed community
Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
-0.1
-1.1
+0.0
-0.4
-1.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
-1.0
-0.4
+0.2
-0.6
mixed community
RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
-0.1
-2.7
-0.3
-0.1
+0.8
stress
Sisomicin 0.008 mg/ml
+0.3
-0.4
-0.3
-0.1
-1.6
supernatant control
Vogels_fungal_media; pH 5.5
+0.1
+0.3
-0.2
+0.0
-2.3
phage
KLEB13 MOI 0.1
-0.6
-0.4
+0.4
+0.1
-1.3
mixed community
RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
-0.2
-1.4
-0.2
+0.1
+0.8
mixed community
RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
-0.4
-1.1
-0.3
-0.3
+1.3
mixed community
RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
+0.1
+1.0
-0.1
-0.0
-1.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.2
+1.7
+0.2
+0.3
-0.5
nitrogen source
L-Threonine (N)
-0.0
-0.5
-0.2
+0.1
+2.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.0
+0.1
+0.3
+2.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.2
+0.0
+0.2
+2.7
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