Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS14645 and BWI76_RS14650 are separated by 1011 nucleotidesBWI76_RS14650 and BWI76_RS14655 are separated by 140 nucleotidesBWI76_RS14655 and BWI76_RS14660 overlap by 4 nucleotidesBWI76_RS14660 and BWI76_RS14665 are separated by 1144 nucleotides BWI76_RS14645: BWI76_RS14645 - sensor histidine kinase, at 3,073,862 to 3,075,619 _RS14645 BWI76_RS14650: BWI76_RS14650 - helix-turn-helix transcriptional regulator, at 3,076,631 to 3,077,605 _RS14650 BWI76_RS14655: BWI76_RS14655 - FKBP-type peptidyl-prolyl isomerase domain-containing protein, at 3,077,746 to 3,079,032 _RS14655 BWI76_RS14660: BWI76_RS14660 - hypothetical protein, at 3,079,029 to 3,079,421 _RS14660 BWI76_RS14665: BWI76_RS14665 - minor fimbrial subunit YfcQ, at 3,080,566 to 3,081,081 _RS14665
Group Condition BWI76_RS14645 BWI76_RS14650 BWI76_RS14655 BWI76_RS14660 BWI76_RS14665
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB -0.2 -3.1 -1.7 N.D. +0.0
phage KLEB17 MOI 1 -0.1 -2.4 +0.3 N.D. -0.8
nitrogen source D-Alanine (N) -0.5 -1.0 -0.8 N.D. -0.4
stress Cobalt chloride 0.5 mM -0.1 -2.1 -0.1 N.D. -0.3
nitrogen source Cytosine (N) +0.2 -1.1 -1.0 N.D. -0.7
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.2 -1.9 -0.3 N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 -1.6 -0.2 N.D. +0.1
nitrogen source L-Arginine (N) -0.8 -0.9 -0.5 N.D. +0.2
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL -0.6 -1.3 -0.7 N.D. +0.5
nitrogen source D-Serine (N) -0.3 -1.3 +0.3 N.D. -0.6
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM -0.1 -2.4 -0.2 N.D. +0.8
nitrogen source L-Arginine (N) -0.7 -1.3 -0.5 N.D. +0.5
stress RCH2_defined_1percent_glucose with Chloride 400 mM -0.0 -1.7 -0.4 N.D. +0.3
nitrogen source L-tyrosine (N) +0.1 -2.1 -0.1 N.D. +0.3
nitrogen source L-Lysine (N) +0.5 -0.7 -0.5 N.D. -1.0
stress Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM +0.5 -1.1 -0.5 N.D. -0.6
phage K. M5a1 KLEB10 MOI 1 +0.5 -1.1 -0.8 N.D. -0.2
mixed community LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL +0.3 -1.8 -0.1 N.D. +0.7
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.8 -1.1 +0.0 N.D. +1.2
stress Paraquat dichloride 0.1 mg/ml -0.1 -1.4 +0.4 N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.3 -0.3 +0.0 N.D. -1.4
stress Paraquat dichloride 0.1 mg/ml -0.2 -1.4 +0.7 N.D. +0.6
rhizosphere rhizosphere sample 1; outgrowth in LB +0.3 -0.3 -1.3 N.D. +1.3
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x -0.3 -0.6 -0.3 N.D. +1.4
mixed community LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL +0.1 -0.9 -0.2 N.D. +1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.8 -0.4 +0.0 N.D. -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +2.5 -0.2 N.D. -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +0.9 +0.3 N.D. +0.4
carbon source Gly-Glu (C) +0.5 +1.8 +0.1 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +2.2 +0.6 N.D. +0.1
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