Fitness for 5 genes in Klebsiella michiganensis M5al

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BWI76_RS14570	BWI76_RS14575	BWI76_RS14580	BWI76_RS14585	BWI76_RS14590
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	-0.2	-4.4	+0.2	+0.3	-0.1
phage	K. M5a1 KLEB23 MOI 10	-0.7	-0.6	-0.8	+0.3	-0.3
mixed community	RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	-0.7	-0.5	-0.5	-0.3	-0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.7	+0.3	-0.3	-0.6	-0.5
mixed community	Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL	-1.4	+0.1	-0.5	-0.1	+0.1
carbon source	RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x	-1.0	+0.2	-0.3	-0.2	-0.4
mixed community	RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-1.2	+0.2	+0.1	-0.6	-0.3
rhizosphere	rhizosphere EcoFAB sample 3; outgrowth in LB	-0.1	+1.0	-1.1	-1.1	-0.3
mixed community	LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL	-1.1	+0.6	-0.5	-0.2	-0.3
mixed community	Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	-1.7	+0.8	-0.1	-0.4	-0.0
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and 2,2'-Dipyridyl 50 uM	-0.8	+0.3	-0.5	-0.1	-0.4
supernatant	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x	-1.0	+0.3	-0.5	-0.1	-0.1
mixed community	Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	-1.4	+0.3	-0.3	+0.1	-0.1
mixed community	RCH2_defined_noCarbon with Mixed culture; Escherichia coli BW25113 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-1.1	+0.4	-0.3	-0.0	-0.4
phage	KLEB13 MOI 0.1	-0.6	-0.5	+0.4	-0.4	-0.2
mixed community	RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	-1.3	+0.5	-0.3	+0.0	-0.1
supernatant	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml	-0.9	+0.4	-0.5	-0.2	-0.0
phage	K. M5a1 KLEB23 MOI 1	-0.8	+0.4	-0.7	-0.2	+0.1
phage	KLEB16 MOI 10	-0.4	-0.3	-1.0	+0.2	+0.4
mixed community	RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.7	+0.8	-0.4	-0.3	-0.3
mixed community	LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	-1.0	+0.5	+0.2	-0.3	-0.2
mixed community	RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	-1.1	+1.0	-0.2	-0.2	-0.3
phage	KLEB31 MOI 1	-0.4	-0.9	+0.4	+0.3	+0.2
nitrogen source	D-Alanine (N)	+0.8	-1.1	+0.5	+0.1	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	-0.0	+1.0	+0.2	-0.0
nitrogen source	L-Arginine (N)	+1.1	+1.2	-0.6	-0.5	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	-0.6	+0.5	+0.2	+0.4
nitrogen source	Gly-DL-Asp (N)	+0.0	+1.4	+0.3	-0.1	-0.3
stress	Sisomicin 0.008 mg/ml	+0.2	+1.9	-0.7	+0.4	-0.1
stress	Chloramphenicol 0.001 mg/ml	+1.0	+1.6	-0.5	+0.3	-0.1