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Fitness for 5 genes in
Klebsiella michiganensis M5al
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BWI76_RS14190 and BWI76_RS14195 are separated by 128 nucleotides
BWI76_RS14195 and BWI76_RS14200 overlap by 4 nucleotides
BWI76_RS14200 and BWI76_RS14205 are separated by 13 nucleotides
BWI76_RS14205 and BWI76_RS14210 are separated by 181 nucleotides
BWI76_RS14190: BWI76_RS14190 - DNA-binding protein, at 2,969,746 to 2,970,486
_RS14190
BWI76_RS14195: BWI76_RS14195 - LysR family transcriptional regulator, at 2,970,615 to 2,971,838
_RS14195
BWI76_RS14200: BWI76_RS14200 - protocatechuate 4,5-dioxygenase, at 2,971,835 to 2,973,097
_RS14200
BWI76_RS14205: BWI76_RS14205 - aromatic acid/H+ symport family MFS transporter, at 2,973,111 to 2,974,480
_RS14205
BWI76_RS14210: BWI76_RS14210 - LysR family transcriptional regulator, at 2,974,662 to 2,975,624
_RS14210
Group
Condition
BWI76
_RS14190
BWI76
_RS14195
BWI76
_RS14200
BWI76
_RS14205
BWI76
_RS14210
phage
KLEB1 MOI 10
-0.9
-0.9
-0.2
-0.8
-1.0
phage
KLEB17 MOI 0.1
-0.6
-0.2
-1.1
-0.2
-0.3
phage
KLEB1 MOI 0.1
-0.6
-0.4
-0.1
-0.7
-0.5
phage
KLEB17 MOI 1
+0.2
-0.5
-0.4
-0.2
-1.1
phage
KLEB1 MOI 0.1
-0.0
-0.3
-0.9
-0.3
-0.4
mixed community
RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
+0.0
-0.4
-0.9
-0.1
-0.4
phage
KLEB20 MOI 1
-0.2
-0.2
-0.5
-0.3
-0.4
mixed community
LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
-0.0
-0.1
-0.4
-0.3
-0.7
phage
KLEB15 MOI 0.1
-0.1
-0.1
-0.4
-0.5
-0.4
phage
KLEB1 MOI 10
+0.2
-0.0
-0.3
-0.6
-0.8
nitrogen source
Thymine (N)
-0.3
+0.0
-1.1
+0.1
-0.1
nitrogen source
Gly-DL-Asp (N)
-0.3
+0.0
-1.0
-0.3
+0.3
mixed community
Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
+0.1
+0.1
-0.8
+0.4
-0.5
micoeukaryotes
Tetrahymena sp., Mixed culture-1
+0.2
+0.2
-0.9
+0.3
-0.6
phage
K. M5a1 KLEB23 MOI 10
+0.5
+0.1
-0.1
-0.3
-0.7
rhizosphere
rhizosphere sample 1; outgrowth in LB
+0.3
+0.4
-0.8
+0.1
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.1
-0.8
-0.1
+0.5
stress
perchlorate 100 mM
+0.5
+0.3
-0.4
+0.1
-0.2
nitrogen source
Glucuronamide (N)
-0.0
-0.2
+0.6
-0.4
+0.3
phage
KLEB16 MOI 10
-0.4
+0.3
+0.2
-0.2
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
+0.6
-0.0
-0.3
-0.3
+0.5
nitrogen source
L-Arginine (N)
+0.7
-0.4
+0.2
-0.1
+0.2
mixed community
LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
+0.6
-0.3
+0.2
+0.3
-0.3
mixed community
LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
+0.5
-0.0
+0.5
+0.1
-0.5
ecofab
RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL
-0.1
+0.2
+0.8
-0.3
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.1
-0.1
+0.9
+0.3
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.1
+1.3
-0.3
+0.0
carbon source
Gly-Glu (C)
+0.3
-0.2
-0.2
+0.8
+0.5
phage
K. M5a1 KLEB26 MOI 0.1
-0.3
+0.6
-0.0
+0.4
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.1
+0.6
+1.1
-0.4
+0.0
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