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Fitness for 5 genes in
Klebsiella michiganensis M5al
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500 nt
BWI76_RS14160 and BWI76_RS14165 are separated by 243 nucleotides
BWI76_RS14165 and BWI76_RS14170 are separated by 48 nucleotides
BWI76_RS14170 and BWI76_RS14175 are separated by 135 nucleotides
BWI76_RS14175 and BWI76_RS14180 overlap by 4 nucleotides
BWI76_RS14160: BWI76_RS14160 - ABC transporter substrate-binding protein, at 2,962,550 to 2,963,512
_RS14160
BWI76_RS14165: BWI76_RS14165 - trans-acting regulatory protein of aco operon, at 2,963,756 to 2,966,509
_RS14165
BWI76_RS14170: BWI76_RS14170 - hypothetical protein, at 2,966,558 to 2,966,941
_RS14170
BWI76_RS14175: BWI76_RS14175 - dehydrogenase, at 2,967,077 to 2,967,952
_RS14175
BWI76_RS14180: BWI76_RS14180 - hypothetical protein, at 2,967,949 to 2,969,034
_RS14180
Group
Condition
BWI76
_RS14160
BWI76
_RS14165
BWI76
_RS14170
BWI76
_RS14175
BWI76
_RS14180
nitrogen source
Cytosine (N)
-0.7
+0.1
-3.1
-0.1
+0.0
mixed community
LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
-0.5
-0.1
-2.5
-0.6
-0.0
mixed community
RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
+0.2
-0.2
-3.0
-0.5
+0.0
nitrogen source
L-Arginine (N)
-0.1
-0.6
-2.7
+0.2
+0.3
nitrogen source
D-Alanine (N)
+0.4
-0.3
-1.7
-0.6
-0.2
phage
KLEB20 MOI 0.1
-0.0
+0.2
-2.2
-0.1
-0.2
mixed community
LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
-0.6
+0.0
-1.1
-0.4
-0.2
ecofab
RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL
+0.3
-0.3
-2.3
+0.1
+0.1
phage
K. M5a1 KLEB23 MOI 10
+0.4
-0.1
-0.9
-0.7
-0.4
phage
B3 MOi 1
-0.0
-0.5
-1.8
+0.3
+0.4
stress
Fusidic 1 mg/ml
+0.0
-0.2
-1.7
-0.2
+0.3
nitrogen source
Casamino Acids (N)
+0.4
+0.1
-1.2
-0.4
-0.4
phage
K. M5a1 KLEB23 MOI 1
+0.3
-0.5
-1.5
-0.3
+0.6
rhizosphere
rhizosphere sample 1; outgrowth in LB
+0.2
+0.3
-2.2
+0.1
+0.3
phage
K. M5a1 KLEB10 MOI 1
-0.9
-0.2
+0.8
-0.8
+0.1
phage
KLEB17 MOI 0.1
-0.5
-0.1
+0.8
-0.3
-0.8
micoeukaryotes
Acanthamoeba sp., muxed culture-2
-0.4
+0.2
-0.9
+1.0
+0.1
stress
Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
-0.7
+0.4
+0.9
-0.3
-0.3
phage
K. M5a1 KLEB10 MOI 1
-0.3
-0.4
+1.4
-0.4
-0.3
phage
K. M5a1 KLEB23 MOI 10
-0.0
-0.9
+1.1
+0.4
-0.4
phage
KLEB15 MOI 1
+0.1
-0.1
+1.5
-0.5
-0.4
phage
K. M5a1 KLEB23 MOI 1
+0.5
-0.3
+0.9
-0.7
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.2
+0.6
+0.6
+0.6
-0.4
supernatant
Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml
+0.8
-0.2
+1.0
-0.4
+0.1
phage
K. M5a1 KLEB26 MOI 0.1
-0.4
+0.1
+1.2
+0.5
+0.1
phage
KLEB15 MOI 1
+0.5
-0.0
+1.5
-0.0
-0.5
nitrogen source
Thymine (N)
-0.3
+0.1
+0.7
+0.7
+0.6
carbon source
Gly-Glu (C)
+1.4
+0.4
+0.5
-0.1
-0.2
stress
RCH2_defined_1percent_glucose with Chloride 600 mM
-0.2
+0.4
+1.6
+0.2
+0.3
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
-0.0
+0.1
+1.4
+0.6
+0.3
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