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Fitness for 5 genes in
Klebsiella michiganensis M5al
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BWI76_RS13770 and BWI76_RS13775 are separated by 9 nucleotides
BWI76_RS13775 and BWI76_RS13780 overlap by 4 nucleotides
BWI76_RS13780 and BWI76_RS13785 overlap by 4 nucleotides
BWI76_RS13785 and BWI76_RS13790 overlap by 4 nucleotides
BWI76_RS13770: BWI76_RS13770 - alkylhydroperoxidase domain protein, at 2,870,997 to 2,872,088
_RS13770
BWI76_RS13775: BWI76_RS13775 - putative FMN-dependent luciferase-like monooxygenase, at 2,872,098 to 2,873,087
_RS13775
BWI76_RS13780: BWI76_RS13780 - ABC transporter ATP-binding protein, at 2,873,084 to 2,874,688
_RS13780
BWI76_RS13785: BWI76_RS13785 - ABC transporter permease, at 2,874,685 to 2,875,536
_RS13785
BWI76_RS13790: BWI76_RS13790 - peptide ABC transporter permease, at 2,875,533 to 2,876,477
_RS13790
Group
Condition
BWI76
_RS13770
BWI76
_RS13775
BWI76
_RS13780
BWI76
_RS13785
BWI76
_RS13790
phage
K. M5a1 KLEB26 MOI 0.1
-0.2
-1.9
-0.5
-3.3
-0.7
phage
K. M5a1 KLEB23 MOI 10
-0.7
-2.2
-0.3
-2.3
-0.3
stress
Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL
-0.8
-2.4
-0.2
-1.0
+0.4
exudates
RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
-1.4
-1.0
+0.0
-1.0
-0.4
phage
K. M5a1 KLEB23 MOI 10
+0.2
-1.0
-0.3
-2.4
-0.2
phage
KLEB20 MOI 0.1
-0.1
-1.2
+0.2
-2.7
+0.3
carbon source
2'-Deoxycytidine 10 mM (C)
+0.3
-0.9
-0.1
-2.2
-0.3
mixed community
RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
-1.3
-1.3
-0.1
-0.5
+0.1
mixed community
LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
-1.1
-1.6
-0.5
+0.1
+0.0
mixed community
Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
-0.1
-0.7
+0.3
-2.6
+0.4
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
+0.3
-1.0
-0.1
-1.7
-0.1
mixed community
Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
-0.7
-1.0
+0.4
-1.1
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.7
+0.8
+0.1
-1.1
-0.3
mixed community
RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
-0.9
-1.0
+0.2
-0.6
+0.2
phage
KLEB17 MOI 1
-0.3
+0.6
+0.0
-1.9
-0.3
stress
Fungal_growth_media_mCAFEs_v1 with Phosphomycin 0.01 mg/mL
-0.9
-0.2
+0.3
-1.3
+0.4
mixed community
RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
+0.2
-0.1
+0.3
-2.6
+0.4
stress
Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
+0.3
-0.6
+0.2
-2.0
+0.4
mixed community
Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
+0.0
-1.1
+0.4
-1.2
+0.2
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x
-0.2
-0.9
+0.4
-1.3
+0.4
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
+0.3
+0.4
+0.0
-2.0
-0.3
phage
K. M5a1 KLEB22 MOI 10
+0.5
+0.5
+0.1
-2.1
-0.4
nitrogen source
Uridine (N)
-0.5
+0.3
+0.6
-1.2
-0.5
nitrogen source
Thymine (N)
+0.1
+0.9
+0.1
-2.4
+0.1
nitrogen source
L-tyrosine (N)
+1.1
-0.8
-0.0
-1.1
+0.0
phage
KLEB13 MOI 0.1
-0.0
-1.4
+0.1
+0.8
+0.7
phage
K. M5a1 KLEB10 MOI 10
+1.0
-1.4
+0.0
+0.5
+0.6
ecofab
LB in EcoFAB_10mL
-0.1
+2.1
-0.2
-0.5
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.0
+0.7
-0.3
-0.8
+0.5
nitrogen source
D-Alanine (N)
+0.3
+1.4
+0.0
+0.5
-0.9
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