Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS13700 and BWI76_RS13705 are separated by 105 nucleotidesBWI76_RS13705 and BWI76_RS13710 overlap by 1 nucleotidesBWI76_RS13710 and BWI76_RS13715 are separated by 9 nucleotidesBWI76_RS13715 and BWI76_RS13720 are separated by 9 nucleotides BWI76_RS13700: BWI76_RS13700 - catechol 1,2-dioxygenase, at 2,858,527 to 2,859,453 _RS13700 BWI76_RS13705: BWI76_RS13705 - Rieske (2Fe-2S) domain-containing protein, at 2,859,559 to 2,860,941 _RS13705 BWI76_RS13710: BWI76_RS13710 - benzoate 1,2-dioxygenase small subunit, at 2,860,941 to 2,861,426 _RS13710 BWI76_RS13715: BWI76_RS13715 - 2-chlorobenzoate 1 2-dioxygenase electron transfer subunit, at 2,861,436 to 2,862,452 _RS13715 BWI76_RS13720: BWI76_RS13720 - 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase, at 2,862,462 to 2,863,235 _RS13720
Group Condition BWI76_RS13700 BWI76_RS13705 BWI76_RS13710 BWI76_RS13715 BWI76_RS13720
phage KLEB16 MOI 10 -0.6 -0.1 -1.2 -2.0 +0.0
stress Cobalt chloride 0.5 mM -1.1 -0.3 -0.3 -1.7 +0.2
phage KLEB29 MOI 1 -0.5 -0.2 -0.5 -0.7 -0.9
supernatant control Vogels_fungal_media; pH 5.5 +0.0 -0.0 -0.7 -1.8 +0.3
phage KLEB20 MOI 1 -0.4 -0.4 -0.1 -1.1 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 -0.2 +0.4 -1.6 -0.1
nitrogen source D-Alanine (N) -0.7 -0.3 +0.4 -0.5 -0.6
nitrogen source Glucuronamide (N) -1.1 +0.3 +0.4 +0.2 -1.3
phage KLEB15 MOI 10 -0.1 +0.1 +0.1 -2.0 +0.6
nitrogen source L-Arginine (N) -1.0 +0.1 +0.6 -1.6 +0.6
mixed community LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL -0.6 +0.1 +0.4 -1.3 +0.2
mixed community RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.2 -0.3 -0.6 -0.7 +0.6
stress Fungal_growth_media_mCAFEs_v1 with Phosphomycin 0.01 mg/mL -0.5 -0.4 +0.5 -1.0 +0.5
phage KLEB17 MOI 0.1 -0.7 +0.0 +0.6 -1.0 +0.2
phage KLEB30 MOI 1 +0.4 -0.1 -0.5 +0.4 -1.0
nitrogen source Thymine (N) -0.1 -0.1 +0.5 -1.5 +0.6
nitrogen source L-Arginine (N) -1.1 -0.2 +0.6 -0.3 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.6 -0.8 -0.7 +0.1
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL +0.2 -0.4 -0.0 -1.0 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -0.3 -0.5 +1.0 +0.2
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -1.2 -0.1 -0.1 +1.1 +0.2
phage K. M5a1 KLEB22 MOI 10 +0.3 +0.2 +0.5 -1.2 +0.1
nitrogen source L-Valine (N) -0.3 +0.1 +0.8 -0.7 +0.4
nitrogen source Glucuronamide (N) +0.4 +0.2 +0.5 -1.1 +0.5
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days -0.6 -0.1 +0.7 +1.0 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 -0.1 -0.0 +2.2 +0.2
nitrogen source Gly-DL-Asp (N) -0.4 +0.0 +1.2 +0.5 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 +0.2 +0.8 +0.8 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.0 +0.0 +1.5 -0.4 +1.5
stress Paraquat dichloride 0.1 mg/ml -0.1 +0.1 +0.2 +0.2 +2.3
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