Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS13540 and BWI76_RS13545 are separated by 11 nucleotidesBWI76_RS13545 and BWI76_RS13550 are separated by 9 nucleotidesBWI76_RS13550 and BWI76_RS13555 overlap by 17 nucleotidesBWI76_RS13555 and BWI76_RS13560 overlap by 4 nucleotides BWI76_RS13540: BWI76_RS13540 - ABC transporter substrate-binding protein, at 2,823,528 to 2,824,469 _RS13540 BWI76_RS13545: BWI76_RS13545 - N-acetyltransferase, at 2,824,481 to 2,824,990 _RS13545 BWI76_RS13550: BWI76_RS13550 - polar amino acid ABC transporter inner membrane subunit, at 2,825,000 to 2,825,926 _RS13550 BWI76_RS13555: BWI76_RS13555 - ABC transporter, at 2,825,910 to 2,826,689 _RS13555 BWI76_RS13560: BWI76_RS13560 - amino acid ABC transporter substrate-binding subunit, at 2,826,686 to 2,827,579 _RS13560
Group Condition BWI76_RS13540 BWI76_RS13545 BWI76_RS13550 BWI76_RS13555 BWI76_RS13560
mixed community LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL -0.2 -4.6 +0.3 N.D. -3.3
nitrogen source Uridine (N) +0.1 -2.0 +0.3 N.D. -5.1
nitrogen source L-Arginine (N) -0.3 -0.5 +0.0 N.D. -5.1
nitrogen source L-tyrosine (N) -0.3 -0.3 +0.1 N.D. -5.1
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml -0.1 -3.1 -0.0 N.D. -1.8
mixed community Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL +0.0 -1.8 +0.2 N.D. -3.4
nitrogen source L-Serine (N) +0.0 -1.3 -0.2 N.D. -3.5
stress nitrite 20 mM -0.1 -0.0 -0.1 N.D. -4.6
mixed community RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.3 -2.2 +0.5 N.D. -3.3
stress RCH2_defined_1percent_glucose with Chloride 600 mM -0.1 -0.8 +0.3 N.D. -4.0
nitrogen source nitrate (N) -0.1 +0.5 +0.0 N.D. -4.8
phage KLEB20 MOI 1 +0.2 -1.4 -0.2 N.D. -2.9
nitrogen source Thymine (N) +0.1 +0.8 +0.1 N.D. -5.1
mixed community RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.1 -1.0 +0.3 N.D. -3.3
ecofab RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL -0.4 +1.0 -0.1 N.D. -4.2
mixed community LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL +0.1 -0.7 +0.1 N.D. -3.3
mixed community LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL +0.3 -1.1 +0.2 N.D. -3.1
phage K. M5a1 KLEB23 MOI 10 -0.3 +0.1 +0.2 N.D. -3.5
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL -0.4 +0.0 +0.3 N.D. -3.3
mixed community RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x -0.1 -3.4 +0.4 N.D. -0.1
phage KLEB1 MOI 10 +0.3 -0.6 +0.2 N.D. -3.2
phage K. M5a1 KLEB26 MOI 0.1 +0.1 +0.0 +0.3 N.D. -3.6
carbon source RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x +0.3 -1.6 +0.2 N.D. -2.0
carbon source Gly-Glu (C) +1.0 -0.9 -0.2 N.D. -3.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.2 +0.8 -0.1 N.D. -3.7
mixed community LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL -0.0 +0.5 +0.3 N.D. -3.5
phage KLEB13 MOI 0.1 -0.1 +0.9 +0.4 N.D. -3.8
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.2 +0.8 -0.4 N.D. -2.8
exudates RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x -0.3 -2.7 +0.2 N.D. +0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +1.4 +0.0 N.D. -2.7
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