Fitness for 5 genes in Klebsiella michiganensis M5al

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BWI76_RS13275	BWI76_RS13280	BWI76_RS13285	BWI76_RS13290	BWI76_RS13295
phage	KLEB17 MOI 1	-2.5	-0.3	N.D.	-1.0	-0.1
supernatant control	Vogels_fungal_media; pH 5.5	-0.4	-0.2	N.D.	-1.3	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.3	+0.0	N.D.	-0.1	+0.1
phage	K. M5a1 KLEB22 MOI 10	-2.3	+0.2	N.D.	-0.3	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-1.4	-0.1	N.D.	-0.4	-0.2
mixed community	RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-1.6	-0.2	N.D.	+0.2	-0.3
carbon source	Inosine (C)	-1.1	-0.7	N.D.	-0.4	+0.4
nitrogen source	L-Serine (N)	-0.9	-0.3	N.D.	-0.6	+0.2
mixed community	RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-1.5	-0.1	N.D.	+0.5	+0.3
nitrogen source	Glycine (N)	-0.9	+0.3	N.D.	+0.4	-0.4
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x	+0.9	-0.3	N.D.	-0.4	-0.7
nitrogen source	L-aspartic (N)	-1.3	+0.8	N.D.	+0.3	+0.2
mixed community	LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL	-0.8	-0.2	N.D.	+0.6	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.0	-0.2	N.D.	+0.2	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6	+0.6	N.D.	-0.2	-0.8
mixed community	Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	+1.3	-0.7	N.D.	-0.1	-0.2
phage	K. M5a1 KLEB23 MOI 10	+0.7	-0.2	N.D.	-0.8	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	-0.5	N.D.	-0.4	+0.6
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x	-0.7	+1.4	N.D.	-0.0	-0.2
carbon source	Trisodium citrate (C)	-0.5	+1.5	N.D.	+0.3	-0.1
stress	Fungal_growth_media_mCAFEs_v1 with Phosphomycin 0.01 mg/mL	+1.3	-0.3	N.D.	+0.7	+0.1
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x	+2.5	-0.3	N.D.	-0.3	+0.1
carbon source	Trisodium citrate (C)	+0.3	+1.4	N.D.	+0.1	+0.2
exudates	RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x	+0.3	+1.8	N.D.	+0.2	-0.2
carbon source	L-Glutamine (C)	+0.9	+1.3	N.D.	+0.1	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	-0.3	N.D.	+2.2	-0.0
mixed community	RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	+0.9	+0.2	N.D.	+1.0	+0.7
carbon source	D-Lactate (C)	-0.1	+3.9	N.D.	-0.8	+0.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.3	+3.1	N.D.	+0.0	+0.7
rhizosphere	rhizosphere EcoFAB sample 3; outgrowth in LB	-0.4	+4.1	N.D.	+0.1	+0.7