Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS13115 and BWI76_RS13120 are separated by 2 nucleotidesBWI76_RS13120 and BWI76_RS13125 are separated by 3 nucleotidesBWI76_RS13125 and BWI76_RS13130 overlap by 11 nucleotidesBWI76_RS13130 and BWI76_RS13135 overlap by 1 nucleotides BWI76_RS13115: BWI76_RS13115 - 2,3-dehydroadipyl-CoA hydratase, at 2,735,366 to 2,736,133 _RS13115 BWI76_RS13120: BWI76_RS13120 - 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase, at 2,736,136 to 2,736,924 _RS13120 BWI76_RS13125: BWI76_RS13125 - 3-hydroxyacyl-CoA dehydrogenase, at 2,736,928 to 2,738,349 _RS13125 BWI76_RS13130: BWI76_RS13130 - phenylacetic acid degradation protein PaaD, at 2,738,339 to 2,738,761 _RS13130 BWI76_RS13135: BWI76_RS13135 - 3-oxoadipyl-CoA thiolase, at 2,738,761 to 2,739,966 _RS13135
Group Condition BWI76_RS13115 BWI76_RS13120 BWI76_RS13125 BWI76_RS13130 BWI76_RS13135
phage K. M5a1 KLEB26 MOI 0.1 N.D. N.D. -0.9 -5.7 -0.8
phage KLEB1 MOI 10 N.D. N.D. -1.6 -2.0 +0.4
phage KLEB29 MOI 1 N.D. N.D. -0.8 -1.0 -1.0
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. N.D. -1.3 -1.3 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.5 -0.6 -0.8
phage KLEB16 MOI 1 N.D. N.D. -0.2 -0.4 -1.2
supernatant control Vogels_fungal_media; pH 5.5 N.D. N.D. -0.6 -0.1 -1.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.0 -0.0 -1.8
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -1.7 -0.2 +0.1
phage KLEB30 MOI 1 N.D. N.D. -0.3 +0.3 -1.4
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days N.D. N.D. -1.1 -0.5 +0.4
stress Paraquat dichloride 0.1 mg/ml N.D. N.D. -1.2 -0.4 +0.4
nitrogen source L-Arginine (N) N.D. N.D. -1.0 -0.4 +0.5
pH LB, pH9 N.D. N.D. +0.6 -1.1 -0.2
supernatant RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM N.D. N.D. -1.2 +0.5 +0.1
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x N.D. N.D. +0.8 -0.8 -0.6
mixed community LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL N.D. N.D. +0.3 -1.3 +0.6
stress Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL N.D. N.D. +0.5 -1.1 +0.3
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml N.D. N.D. +0.8 -0.6 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.5 +0.9 -0.6
stress RCH2_defined_1percent_glucose with Chloride 600 mM N.D. N.D. -0.3 -0.7 +1.0
stress RCH2_defined_1percent_glucose with Chloride 400 mM N.D. N.D. +0.3 -1.0 +0.8
stress RCH2_defined_1percent_glucose with Chloride 200 mM and Betaine 100 uM N.D. N.D. -0.8 +0.1 +0.9
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. N.D. -0.8 +0.5 +0.6
stress Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM N.D. N.D. +1.0 -0.7 +0.1
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL N.D. N.D. +0.6 -0.9 +0.7
micoeukaryotes Dictyostellum sp.mixed culture-1 N.D. N.D. +0.4 +1.2 -0.7
phage K. M5a1 KLEB10 MOI 10 N.D. N.D. +1.0 +0.8 -0.6
ecofab RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL N.D. N.D. -0.7 +0.5 +1.9
phage K. M5a1 KLEB10 MOI 1 N.D. N.D. +0.7 +0.4 +0.9
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