Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS12315 and BWI76_RS12320 are separated by 13 nucleotidesBWI76_RS12320 and BWI76_RS12325 are separated by 93 nucleotidesBWI76_RS12325 and BWI76_RS12330 overlap by 1 nucleotidesBWI76_RS12330 and BWI76_RS12335 overlap by 14 nucleotides BWI76_RS12315: BWI76_RS12315 - hypothetical protein, at 2,569,935 to 2,570,459 _RS12315 BWI76_RS12320: BWI76_RS12320 - hypothetical protein, at 2,570,473 to 2,570,847 _RS12320 BWI76_RS12325: BWI76_RS12325 - hypothetical protein, at 2,570,941 to 2,574,228 _RS12325 BWI76_RS12330: BWI76_RS12330 - hypothetical protein, at 2,574,228 to 2,574,701 _RS12330 BWI76_RS12335: BWI76_RS12335 - hypothetical protein, at 2,574,688 to 2,575,170 _RS12335
Group Condition BWI76_RS12315 BWI76_RS12320 BWI76_RS12325 BWI76_RS12330 BWI76_RS12335
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB N.D. -1.4 -1.3 -1.4 -2.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.3 -0.8 -1.3 -1.6
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x N.D. -1.4 -1.0 -0.7 -1.5
mixed community RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x N.D. -0.9 -0.9 -0.6 -2.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. -0.4 -0.8 -2.7 -0.6
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -1.9 -1.3 -0.1 -1.1
mixed community RCH2_defined_noCarbon with Mixed culture; Escherichia coli BW25113 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x N.D. -1.0 -1.0 -0.8 -1.6
mixed community RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x N.D. -1.5 -1.1 -0.5 -1.3
mixed community RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x N.D. -1.2 -1.0 -0.8 -1.2
mixed community LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL N.D. -1.0 -1.0 -0.6 -1.7
stress Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL N.D. -1.0 -1.0 -0.8 -1.4
mixed community RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x N.D. -1.1 -1.0 -0.7 -1.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.8 -1.1 -0.8 -1.3
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL N.D. -0.9 -1.1 -0.3 -1.7
stress Fungal_growth_media_mCAFEs_v1 with Aluminum chloride 2 mM N.D. -1.3 -1.0 -0.8 -0.9
stress Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL N.D. -0.8 -1.1 -1.3 -0.8
mixed community LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL N.D. -1.1 -1.0 -0.8 -1.0
mixed community RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x N.D. -1.2 -1.1 -0.5 -1.1
stress Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM N.D. -1.2 -0.8 -0.6 -1.3
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml N.D. -1.4 -0.9 +0.0 -1.6
mixed community RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x N.D. -1.1 -1.1 -0.5 -1.1
mixed community LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL N.D. -1.4 -1.0 -0.6 -0.9
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and 2,2'-Dipyridyl 50 uM N.D. -1.0 -0.9 -0.8 -1.1
exudates RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x N.D. -0.6 -0.9 -1.4 -0.9
mixed community RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x N.D. -0.9 -0.9 -0.7 -1.3
mixed community LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL N.D. -0.7 -0.8 -1.0 -1.2
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x N.D. -1.8 -0.7 -0.0 -1.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x N.D. -0.8 -0.7 -1.0 -1.2
carbon source a-Cyclodextrin (C) N.D. +1.4 +1.3 +1.4 +1.2
carbon source a-Cyclodextrin (C) N.D. +1.4 +1.4 +1.8 +1.1
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