Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS11930 and BWI76_RS11935 are separated by 245 nucleotidesBWI76_RS11935 and BWI76_RS11940 are separated by 394 nucleotidesBWI76_RS11940 and BWI76_RS11945 are separated by 56 nucleotidesBWI76_RS11945 and BWI76_RS11950 are separated by 161 nucleotides BWI76_RS11930: BWI76_RS11930 - LysR family transcriptional regulator CysB, at 2,511,557 to 2,512,531 _RS11930 BWI76_RS11935: BWI76_RS11935 - YmiA family putative membrane protein, at 2,512,777 to 2,512,944 _RS11935 BWI76_RS11940: BWI76_RS11940 - aconitate hydratase 1, at 2,513,339 to 2,516,011 _RS11940 BWI76_RS11945: BWI76_RS11945 - GTP cyclohydrolase II, at 2,516,068 to 2,516,658 _RS11945 BWI76_RS11950: BWI76_RS11950 - phosphatidylglycerophosphatase B, at 2,516,820 to 2,517,587 _RS11950
Group Condition BWI76_RS11930 BWI76_RS11935 BWI76_RS11940 BWI76_RS11945 BWI76_RS11950
stress Nickel (II) chloride 1.5 mM N.D. -0.5 -1.2 N.D. -0.0
phage KLEB17 MOI 1 N.D. -0.2 -1.0 N.D. -0.4
nitrogen source Gly-DL-Asp (N) N.D. -0.8 -0.2 N.D. -0.6
phage KLEB17 MOI 0.1 N.D. -1.1 -0.6 N.D. +0.4
nitrogen source Uridine (N) N.D. -0.4 +0.2 N.D. -1.1
stress Nickel (II) chloride 1.5 mM N.D. +0.2 -1.3 N.D. -0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM N.D. -0.6 -0.8 N.D. +0.5
phage KLEB1 MOI 10 N.D. +0.5 -0.1 N.D. -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -1.0 +0.4 N.D. +0.2
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -0.6 -0.5 N.D. +0.8
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. -0.7 -0.1 N.D. +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.6 -0.4 N.D. +1.0
stress Paraquat dichloride 0.1 mg/ml N.D. -0.5 +0.9 N.D. -0.4
phage K. M5a1 KLEB23 MOI 10 N.D. +0.6 +0.3 N.D. -0.7
mixed community LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL N.D. -0.6 -0.0 N.D. +0.8
stress Paraquat dichloride 0.1 mg/ml N.D. -0.7 +0.8 N.D. +0.2
stress Sisomicin 0.008 mg/ml N.D. +1.0 -0.3 N.D. -0.3
exudates RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x N.D. -0.6 +0.1 N.D. +1.0
mixed community LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL N.D. -0.8 +0.5 N.D. +0.8
phage KLEB13 MOI 0.1 N.D. -0.3 +0.5 N.D. +0.8
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days N.D. -0.2 +0.5 N.D. +1.1
mixed community LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL N.D. +0.2 +1.0 N.D. +0.3
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml N.D. +0.4 +0.5 N.D. +0.6
nitrogen source Glucuronamide (N) N.D. -0.0 +0.6 N.D. +0.9
phage KLEB15 MOI 10 N.D. +0.5 +0.2 N.D. +0.9
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB N.D. +0.9 +0.1 N.D. +0.6
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x N.D. +0.4 +0.5 N.D. +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +1.6 +0.0 N.D. +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.6 +0.3 N.D. +1.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.2 +1.2 N.D. +1.3
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