Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS11700 and BWI76_RS11705 are separated by 4 nucleotidesBWI76_RS11705 and BWI76_RS11710 are separated by 34 nucleotidesBWI76_RS11710 and BWI76_RS11715 are separated by 102 nucleotidesBWI76_RS11715 and BWI76_RS11720 are separated by 230 nucleotides BWI76_RS11700: BWI76_RS11700 - hypothetical protein, at 2,461,928 to 2,462,470 _RS11700 BWI76_RS11705: BWI76_RS11705 - hypothetical protein, at 2,462,475 to 2,464,517 _RS11705 BWI76_RS11710: BWI76_RS11710 - nucleotide excision repair endonuclease, at 2,464,552 to 2,465,412 _RS11710 BWI76_RS11715: BWI76_RS11715 - NAD(+) synthetase, at 2,465,515 to 2,466,342 _RS11715 BWI76_RS11720: BWI76_RS11720 - transcriptional regulator, at 2,466,573 to 2,466,911 _RS11720
Group Condition BWI76_RS11700 BWI76_RS11705 BWI76_RS11710 BWI76_RS11715 BWI76_RS11720
nitrogen source Gly-DL-Asp (N) -5.3 +0.6 -1.2 N.D. +0.0
phage K. M5a1 KLEB26 MOI 0.1 -3.8 -0.9 -0.0 N.D. -0.8
carbon source 2-Deoxyadenosine 4 mM (C) -5.0 -0.0 -0.4 N.D. +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -5.3 +0.4 +0.3 N.D. +0.3
phage KLEB29 MOI 1 -4.0 +0.3 +0.1 N.D. -0.1
phage K. M5a1 KLEB22 MOI 10 -4.3 +0.0 +0.7 N.D. -0.0
phage KLEB14 MOI 0.1 -2.3 +0.1 -0.4 N.D. -0.3
nitrogen source L-Phenylalanine (N) -2.2 -0.8 +0.3 N.D. -0.0
nitrogen source Casamino Acids (N) -2.6 -0.0 +0.1 N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -3.1 +0.2 +0.0 N.D. +0.5
nitrogen source L-Proline (N) -2.1 +0.4 -0.1 N.D. -0.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x -1.9 -0.9 +0.3 N.D. +0.6
phage KLEB24 MOI 1 -2.2 +0.8 -0.0 N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.0 -0.1 +0.4 N.D. +0.3
nitrogen source L-Arginine (N) -0.9 +0.8 -1.0 N.D. -0.2
micoeukaryotes Tetrahymena sp., Mixed culture-1 -2.1 +0.3 +0.4 N.D. +0.3
stress RCH2_defined_1percent_glucose with Chloride 600 mM -2.3 +0.5 +0.4 N.D. +0.3
stress Cephalothin 0.16 mg/ml -1.7 +0.2 -0.2 N.D. +0.9
phage K. M5a1 KLEB23 MOI 10 +0.8 -1.4 +0.5 N.D. +0.1
exudates RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x -1.5 +0.9 +0.3 N.D. +0.4
phage K. M5a1 KLEB23 MOI 1 +1.4 -0.7 -0.6 N.D. +0.2
rhizosphere rhizosphere sample 1; outgrowth in LB -0.5 +1.7 -0.1 N.D. +0.4
stress Sisomicin 0.008 mg/ml +2.1 +0.4 -0.4 N.D. -0.4
mixed community RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x +1.0 +0.8 +0.5 N.D. +0.4
mixed community Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL +1.1 +0.6 +0.7 N.D. +0.4
mixed community LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL +2.1 +0.2 +0.5 N.D. +0.0
stress Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL +1.6 +0.5 +0.3 N.D. +0.5
mixed community RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +1.1 +0.6 +1.0 N.D. +0.4
stress Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL +2.1 +0.2 +0.7 N.D. +0.2
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x +1.6 +1.1 +0.8 N.D. +0.4
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