Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS10960 and BWI76_RS10965 are separated by 209 nucleotidesBWI76_RS10965 and BWI76_RS10970 overlap by 15 nucleotidesBWI76_RS10970 and BWI76_RS10975 are separated by 73 nucleotidesBWI76_RS10975 and BWI76_RS10980 are separated by 124 nucleotides BWI76_RS10960: BWI76_RS10960 - lipid A biosynthesis lauroyl acyltransferase, at 2,313,862 to 2,314,782 _RS10960 BWI76_RS10965: BWI76_RS10965 - sulfurtransferase, at 2,314,992 to 2,316,056 _RS10965 BWI76_RS10970: BWI76_RS10970 - DUF2770 domain-containing protein, at 2,316,042 to 2,316,155 _RS10970 BWI76_RS10975: BWI76_RS10975 - N-methyltryptophan oxidase, at 2,316,229 to 2,317,347 _RS10975 BWI76_RS10980: BWI76_RS10980 - biofilm formation regulatory protein BssS, at 2,317,472 to 2,317,726 _RS10980
Group Condition BWI76_RS10960 BWI76_RS10965 BWI76_RS10970 BWI76_RS10975 BWI76_RS10980
phage KLEB1 MOI 10 N.D. -1.0 N.D. -0.6 -0.6
phage KLEB17 MOI 1 N.D. -0.0 N.D. -1.6 +0.0
phage K. M5a1 KLEB10 MOI 10 N.D. -0.7 N.D. -0.8 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.1 N.D. -1.0 -0.6
mixed community Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL N.D. -1.0 N.D. -0.1 -0.3
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days N.D. -0.1 N.D. -0.9 -0.3
phage KLEB20 MOI 0.1 N.D. -0.2 N.D. -1.0 -0.1
phage KLEB1 MOI 0.1 N.D. -0.1 N.D. -0.3 -0.8
carbon source D-Alanine (C) N.D. +0.1 N.D. -0.7 -0.6
micoeukaryotes Dictyostellum sp.mixed culture-1 N.D. +0.1 N.D. -0.8 -0.5
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB N.D. +0.1 N.D. -0.8 -0.3
stress Cobalt chloride 0.5 mM N.D. -0.3 N.D. -0.8 +0.1
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL N.D. -0.8 N.D. +0.3 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.6 N.D. -1.4 -0.0
phage KLEB15 MOI 0.1 N.D. -0.5 N.D. +0.3 -0.5
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x N.D. -0.4 N.D. +0.4 -0.6
stress Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM N.D. -0.7 N.D. -0.2 +0.3
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x N.D. -0.5 N.D. +0.4 -0.4
nitrogen source L-Phenylalanine (N) N.D. -0.3 N.D. +0.5 -0.4
nitrogen source Uridine (N) N.D. +0.6 N.D. -0.2 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.4 N.D. +0.5 -0.3
stress Sisomicin 0.008 mg/ml N.D. -0.7 N.D. +0.7 -0.2
stress Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM N.D. -0.5 N.D. +0.6 -0.2
stress perchlorate 100 mM N.D. -0.7 N.D. +0.6 +0.1
carbon source Inosine (C) N.D. +0.5 N.D. -0.4 +0.3
mixed community LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL N.D. -0.4 N.D. +0.3 +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.4 N.D. +1.1 -0.1
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and 2,2'-Dipyridyl 50 uM N.D. +0.8 N.D. +0.2 -0.3
nitrogen source Cytosine (N) N.D. +0.4 N.D. +0.7 -0.1
phage KLEB16 MOI 1 N.D. +0.2 N.D. +0.7 +0.4
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