Fitness for 5 genes in Klebsiella michiganensis M5al

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BWI76_RS10020	BWI76_RS10025	BWI76_RS10030	BWI76_RS10035	BWI76_RS10040
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	+0.4	+0.3	+0.0	-4.5	+0.3
phage	KLEB1 MOI 10	+0.0	+0.4	+0.3	-3.7	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.2	+0.1	-0.2	-2.9	-0.1
nitrogen source	D-Alanine (N)	-0.1	-0.1	+0.0	-2.3	-0.5
nitrogen source	L-tyrosine (N)	+0.3	+0.2	+0.1	-3.1	-0.4
mixed community	RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.5	-0.1	-0.3	-1.4	-0.4
carbon source	D-Glucose (C)	+0.2	+0.2	+0.1	-1.0	-1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	+0.2	+0.3	-1.0	-0.9
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x	+0.2	+0.1	+0.2	-1.0	-1.2
nitrogen source	Gly-DL-Asp (N)	-0.1	+0.1	+0.5	-1.5	-0.7
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.7	-0.5	-0.3	+0.7	-0.7
carbon source	Gly-Glu (C)	+0.1	+0.3	-0.1	-3.0	+1.3
mixed community	LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL	-0.2	-0.3	+0.0	-1.4	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	+0.3	+0.1	-1.9	+0.6
micoeukaryotes	Dictyostellum sp.mixed culture-2	-0.6	-0.4	-0.5	+0.5	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+0.3	+0.8	-1.0	-0.4
mixed community	RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.6	-0.2	-0.3	+0.9	+0.9
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.9	+1.7	+0.1	-1.8	+0.0
lb dilute	Dilute LB (1/20)	+0.8	+0.8	+0.5	-0.5	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.4	+0.2	+1.3	-0.6
phage	KLEB31 MOI 1	-0.3	+0.3	-0.5	+1.2	+1.3
stress	Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL	-0.4	-0.1	+0.2	+2.1	+0.1
lb dilute	Dilute LB (1/20)	+0.9	+0.6	+0.7	+0.5	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.0	+0.3	+1.1	+1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.2	+0.5	+1.5	+0.4
nitrogen source	Glucuronamide (N)	+0.5	+0.6	+0.2	+0.6	+0.9
exudates	RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x	+0.7	+1.3	+0.7	+0.8	+0.6
rhizosphere	rhizosphere EcoFAB sample 3; outgrowth in LB	+2.2	+1.9	+0.6	-0.1	-0.2
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x	+1.9	+1.8	+1.7	+0.1	-0.7
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x	+2.1	+2.0	+1.7	+0.0	-0.2