Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS09840 and BWI76_RS09845 overlap by 1 nucleotidesBWI76_RS09845 and BWI76_RS09850 are separated by 183 nucleotidesBWI76_RS09850 and BWI76_RS09855 overlap by 64 nucleotidesBWI76_RS09855 and BWI76_RS09860 are separated by 149 nucleotides BWI76_RS09840: BWI76_RS09840 - condensin subunit E, at 2,064,113 to 2,064,817 _RS09840 BWI76_RS09845: BWI76_RS09845 - chromosome partition protein MukB, at 2,064,817 to 2,069,265 _RS09845 BWI76_RS09850: BWI76_RS09850 - L,D-transpeptidase, at 2,069,449 to 2,071,242 _RS09850 BWI76_RS09855: BWI76_RS09855 - hypothetical protein, at 2,071,179 to 2,071,393 _RS09855 BWI76_RS09860: BWI76_RS09860 - hypothetical protein, at 2,071,543 to 2,072,094 _RS09860
Group Condition BWI76_RS09840 BWI76_RS09845 BWI76_RS09850 BWI76_RS09855 BWI76_RS09860
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.2 N.D. -3.3
stress Cephalothin 0.16 mg/ml N.D. N.D. +0.2 N.D. -3.3
nitrogen source L-Lysine (N) N.D. N.D. -0.1 N.D. -2.1
exudates RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x N.D. N.D. +0.0 N.D. -2.0
mixed community LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL N.D. N.D. -0.3 N.D. -1.6
stress Sisomicin 0.008 mg/ml N.D. N.D. +0.5 N.D. -2.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM N.D. N.D. +0.0 N.D. -1.8
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.2 N.D. -1.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.3 N.D. -1.5
supernatant control Vogels_fungal_media 0.1X N.D. N.D. -0.6 N.D. -1.1
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL N.D. N.D. -0.5 N.D. -1.1
mixed community LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL N.D. N.D. -0.6 N.D. -1.0
mixed community LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL N.D. N.D. -0.2 N.D. -1.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM N.D. N.D. -0.1 N.D. -1.4
phage K. M5a1 KLEB26 MOI 0.1 N.D. N.D. +0.3 N.D. -1.7
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM N.D. N.D. +0.1 N.D. -1.4
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB N.D. N.D. +0.2 N.D. -1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +0.2 N.D. -1.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. +0.5 N.D. -1.5
mixed community RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x N.D. N.D. +0.4 N.D. -1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. +0.4 N.D. -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. +0.6 N.D. -1.2
micoeukaryotes Dictyostellum sp.mixed culture-2 N.D. N.D. +0.6 N.D. -1.1
micoeukaryotes Acanthamoeba sp., muxed culture-2 N.D. N.D. +0.6 N.D. -0.9
nitrogen source Thymine (N) N.D. N.D. -1.1 N.D. +1.6
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x N.D. N.D. +1.2 N.D. -0.5
phage KLEB17 MOI 1 N.D. N.D. -0.2 N.D. +1.7
stress Chlorite 2.5 mM N.D. N.D. -0.0 N.D. +1.5
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. N.D. +1.0 N.D. +0.5
stress Chloramphenicol 0.001 mg/ml N.D. N.D. +0.9 N.D. +0.9
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