Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS09600 and BWI76_RS09605 are separated by 68 nucleotidesBWI76_RS09605 and BWI76_RS09610 are separated by 324 nucleotidesBWI76_RS09610 and BWI76_RS09615 are separated by 30 nucleotidesBWI76_RS09615 and BWI76_RS09620 are separated by 138 nucleotides BWI76_RS09600: BWI76_RS09600 - macrolide ABC transporter permease/ATP-binding protein MacB, at 2,008,593 to 2,010,539 _RS09600 BWI76_RS09605: BWI76_RS09605 - cold-shock protein, at 2,010,608 to 2,010,838 _RS09605 BWI76_RS09610: BWI76_RS09610 - ATP-dependent Clp protease adaptor ClpS, at 2,011,163 to 2,011,480 _RS09610 BWI76_RS09615: BWI76_RS09615 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 2,011,511 to 2,013,793 _RS09615 BWI76_RS09620: BWI76_RS09620 - translation initiation factor IF-1, at 2,013,932 to 2,014,150 _RS09620
Group Condition BWI76_RS09600 BWI76_RS09605 BWI76_RS09610 BWI76_RS09615 BWI76_RS09620
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB -0.1 N.D. -2.3 -5.3 N.D.
nitrogen source nitrate (N) -0.2 N.D. -2.0 -4.8 N.D.
nitrogen source Uridine (N) -0.3 N.D. -1.5 -5.0 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.3 N.D. -2.9 -3.4 N.D.
stress RCH2_defined_1percent_glucose with Chloride 600 mM -0.3 N.D. -1.4 -4.0 N.D.
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x -0.0 N.D. -0.8 -4.9 N.D.
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days +0.0 N.D. -2.1 -3.7 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.0 N.D. -2.3 -3.4 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 N.D. -0.4 -4.8 N.D.
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL -0.1 N.D. -0.2 -4.7 N.D.
nitrogen source nitrate (N) -0.2 N.D. -1.6 -3.1 N.D.
nitrogen source D-Serine (N) +0.3 N.D. -0.3 -4.8 N.D.
carbon source D,L-Malic Acid (C) +0.2 N.D. -1.8 -3.2 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.1 N.D. -1.2 -3.5 N.D.
mixed community LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL -0.2 N.D. +0.3 -4.8 N.D.
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.1 N.D. -0.1 -4.3 N.D.
mixed community LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL -0.7 N.D. -1.3 -2.3 N.D.
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL -0.2 N.D. -1.2 -2.8 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.1 N.D. -1.9 -1.9 N.D.
phage K. M5a1 KLEB10 MOI 1 +0.0 N.D. +0.7 -4.6 N.D.
carbon source L-Sorbose (C) +0.2 N.D. -0.7 -3.3 N.D.
carbon source D-Lactate (C) +0.2 N.D. -1.3 -2.6 N.D.
stress Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL -0.8 N.D. -0.5 -2.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 N.D. -0.0 -3.5 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.5 N.D. -0.6 -3.5 N.D.
mixed community LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL -0.1 N.D. +0.2 -3.7 N.D.
stress Sisomicin 0.008 mg/ml -0.3 N.D. -1.4 -1.9 N.D.
carbon source L-Malic (C) -0.2 N.D. -0.2 -3.1 N.D.
nitrogen source Gly-DL-Asp (N) -0.1 N.D. +0.6 -3.1 N.D.
nitrogen source L-Lysine (N) +0.3 N.D. +1.7 +1.6 N.D.
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