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Fitness for 5 genes in
Klebsiella michiganensis M5al
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BWI76_RS09545 and BWI76_RS09550 are separated by 10 nucleotides
BWI76_RS09550 and BWI76_RS09555 are separated by 154 nucleotides
BWI76_RS09555 and BWI76_RS09560 are separated by 151 nucleotides
BWI76_RS09560 and BWI76_RS09565 are separated by 39 nucleotides
BWI76_RS09545: BWI76_RS09545 - NAD-dependent epimerase/dehydratase, at 1,995,824 to 1,997,257
_RS09545
BWI76_RS09550: BWI76_RS09550 - low-specificity L-threonine aldolase, at 1,997,268 to 1,998,269
_RS09550
BWI76_RS09555: BWI76_RS09555 - pyruvate oxidase, at 1,998,424 to 2,000,142
_RS09555
BWI76_RS09560: BWI76_RS09560 - DoxX family membrane protein, at 2,000,294 to 2,000,728
_RS09560
BWI76_RS09565: BWI76_RS09565 - hybrid-cluster NAD(P)-dependent oxidoreductase, at 2,000,768 to 2,001,736
_RS09565
Group
Condition
BWI76
_RS09545
BWI76
_RS09550
BWI76
_RS09555
BWI76
_RS09560
BWI76
_RS09565
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
-0.2
-0.1
+0.1
-3.6
+0.2
stress
Cobalt chloride 0.5 mM
-0.1
+0.2
+0.1
-2.5
-0.7
ecofab
RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL
-0.6
-0.2
-0.3
-0.9
-0.8
phage
KLEB20 MOI 1
-0.2
-0.2
-0.1
-2.1
-0.2
stress
nitrite 20 mM
-0.1
-0.4
-0.6
-1.6
+0.2
supernatant
LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
+0.3
+0.1
-0.6
-1.3
-0.2
supernatant
Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml
+0.2
-0.2
-1.1
-0.9
+0.5
mixed community
RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
-0.4
+0.3
-1.7
+0.4
+0.0
phage
KLEB13 MOI 0.1
-0.3
-0.6
-1.4
+1.5
-0.2
stress
Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL
-0.2
-0.5
-0.8
-0.3
+0.8
phage
KLEB1 MOI 10
-0.3
-0.3
+0.9
-1.1
-0.0
phage
KLEB1 MOI 0.1
+0.1
+0.1
-0.6
-1.1
+0.7
phage
K. M5a1 KLEB23 MOI 10
+0.1
+0.4
-0.0
-1.6
+0.5
carbon source
2-Deoxyadenosine 4 mM (C)
-0.2
-0.9
-0.4
+1.0
+0.1
nitrogen source
Uridine (N)
+0.1
+0.3
+0.3
-1.5
+0.4
phage
K. M5a1 KLEB22 MOI 1
-0.2
+0.1
+0.4
-1.2
+0.5
mixed community
LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
-0.9
+0.2
+0.7
+0.3
-0.6
mixed community
RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
+0.1
-0.2
-1.3
+0.5
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
-0.6
+1.3
-0.8
-0.0
micoeukaryotes
Acanthamoeba sp., muxed culture-2
-0.0
+0.7
-0.8
+0.5
-0.4
rhizosphere
rhizosphere sample 1; outgrowth in LB
+0.4
+0.6
-0.9
+0.3
-0.3
mixed community
LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL
-0.5
+0.2
-0.5
+0.4
+0.8
phage
K. M5a1 KLEB23 MOI 1
-0.7
-0.3
+0.6
+0.4
+0.6
mixed community
RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
+0.2
+0.5
-1.3
+0.9
+0.5
nitrogen source
Adenosine (N)
-0.5
+0.5
+0.4
+0.8
-0.2
nitrogen source
Cytosine (N)
+0.5
-0.5
-0.4
+0.9
+0.5
carbon source
D-Alanine (C)
-0.6
+0.3
+0.4
+0.7
+0.3
mixed community
RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
+0.2
+0.4
-0.6
+0.6
+0.7
micoeukaryotes
Tetrahymena sp., Mixed culture-1
-0.1
+0.5
-0.4
+1.2
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
+0.4
-0.2
+1.4
+0.3
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