Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS09545 and BWI76_RS09550 are separated by 10 nucleotidesBWI76_RS09550 and BWI76_RS09555 are separated by 154 nucleotidesBWI76_RS09555 and BWI76_RS09560 are separated by 151 nucleotidesBWI76_RS09560 and BWI76_RS09565 are separated by 39 nucleotides BWI76_RS09545: BWI76_RS09545 - NAD-dependent epimerase/dehydratase, at 1,995,824 to 1,997,257 _RS09545 BWI76_RS09550: BWI76_RS09550 - low-specificity L-threonine aldolase, at 1,997,268 to 1,998,269 _RS09550 BWI76_RS09555: BWI76_RS09555 - pyruvate oxidase, at 1,998,424 to 2,000,142 _RS09555 BWI76_RS09560: BWI76_RS09560 - DoxX family membrane protein, at 2,000,294 to 2,000,728 _RS09560 BWI76_RS09565: BWI76_RS09565 - hybrid-cluster NAD(P)-dependent oxidoreductase, at 2,000,768 to 2,001,736 _RS09565
Group Condition BWI76_RS09545 BWI76_RS09550 BWI76_RS09555 BWI76_RS09560 BWI76_RS09565
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.2 -0.1 +0.1 -3.6 +0.2
stress Cobalt chloride 0.5 mM -0.1 +0.2 +0.1 -2.5 -0.7
ecofab RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL -0.6 -0.2 -0.3 -0.9 -0.8
phage KLEB20 MOI 1 -0.2 -0.2 -0.1 -2.1 -0.2
stress nitrite 20 mM -0.1 -0.4 -0.6 -1.6 +0.2
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.3 +0.1 -0.6 -1.3 -0.2
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml +0.2 -0.2 -1.1 -0.9 +0.5
mixed community RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x -0.4 +0.3 -1.7 +0.4 +0.0
phage KLEB13 MOI 0.1 -0.3 -0.6 -1.4 +1.5 -0.2
stress Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL -0.2 -0.5 -0.8 -0.3 +0.8
phage KLEB1 MOI 10 -0.3 -0.3 +0.9 -1.1 -0.0
phage KLEB1 MOI 0.1 +0.1 +0.1 -0.6 -1.1 +0.7
phage K. M5a1 KLEB23 MOI 10 +0.1 +0.4 -0.0 -1.6 +0.5
carbon source 2-Deoxyadenosine 4 mM (C) -0.2 -0.9 -0.4 +1.0 +0.1
nitrogen source Uridine (N) +0.1 +0.3 +0.3 -1.5 +0.4
phage K. M5a1 KLEB22 MOI 1 -0.2 +0.1 +0.4 -1.2 +0.5
mixed community LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL -0.9 +0.2 +0.7 +0.3 -0.6
mixed community RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.1 -0.2 -1.3 +0.5 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 -0.6 +1.3 -0.8 -0.0
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.0 +0.7 -0.8 +0.5 -0.4
rhizosphere rhizosphere sample 1; outgrowth in LB +0.4 +0.6 -0.9 +0.3 -0.3
mixed community LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL -0.5 +0.2 -0.5 +0.4 +0.8
phage K. M5a1 KLEB23 MOI 1 -0.7 -0.3 +0.6 +0.4 +0.6
mixed community RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.2 +0.5 -1.3 +0.9 +0.5
nitrogen source Adenosine (N) -0.5 +0.5 +0.4 +0.8 -0.2
nitrogen source Cytosine (N) +0.5 -0.5 -0.4 +0.9 +0.5
carbon source D-Alanine (C) -0.6 +0.3 +0.4 +0.7 +0.3
mixed community RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.2 +0.4 -0.6 +0.6 +0.7
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.1 +0.5 -0.4 +1.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 +0.4 -0.2 +1.4 +0.3
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