Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS09400 and BWI76_RS09405 are separated by 305 nucleotidesBWI76_RS09405 and BWI76_RS09410 overlap by 38 nucleotidesBWI76_RS09410 and BWI76_RS09415 are separated by 74 nucleotidesBWI76_RS09415 and BWI76_RS09420 overlap by 38 nucleotides BWI76_RS09400: BWI76_RS09400 - phage transcriptional activator, Ogr/delta, at 1,971,932 to 1,972,147 _RS09400 BWI76_RS09405: BWI76_RS09405 - hypothetical protein, at 1,972,453 to 1,972,632 _RS09405 BWI76_RS09410: BWI76_RS09410 - reverse transcriptase, at 1,972,595 to 1,973,191 _RS09410 BWI76_RS09415: BWI76_RS09415 - IS3 family transposase, at 1,973,266 to 1,974,377 _RS09415 BWI76_RS09420: BWI76_RS09420 - hypothetical protein, at 1,974,340 to 1,974,579 _RS09420
Group Condition BWI76_RS09400 BWI76_RS09405 BWI76_RS09410 BWI76_RS09415 BWI76_RS09420
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x -0.3 +0.7 -0.1 N.D. -5.2
nitrogen source Thymine (N) -1.5 +0.3 -1.0 N.D. -0.8
mixed community RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x -0.4 -0.3 -1.0 N.D. -1.3
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB +0.3 -0.8 -1.1 N.D. -1.2
exudates RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x +0.2 -0.4 -0.8 N.D. -1.6
nitrogen source Glucuronamide (N) -0.2 +0.2 -1.7 N.D. -0.8
phage KLEB17 MOI 1 -0.3 -1.1 -0.6 N.D. -0.3
phage K. M5a1 KLEB26 MOI 0.1 +0.1 -0.5 -0.1 N.D. -1.7
phage KLEB20 MOI 1 +0.2 +0.2 -0.2 N.D. -2.2
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and Iron (II) 0.002 mg/ml +0.1 +0.3 -0.4 N.D. -1.9
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL +0.2 -0.2 -0.6 N.D. -1.3
phage KLEB30 MOI 1 -1.0 -0.0 +0.3 N.D. -1.2
phage KLEB20 MOI 0.1 -0.3 -0.5 +0.1 N.D. -1.3
phage KLEB1 MOI 0.1 -0.5 +0.1 +0.2 N.D. -1.7
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x -0.2 -0.5 +0.2 N.D. -1.2
rhizosphere rhizosphere sample 1; outgrowth in LB -0.1 -0.2 -1.5 N.D. +0.3
nitrogen source L-Arginine (N) -0.2 +0.4 -1.2 N.D. -0.4
phage K. M5a1 KLEB23 MOI 1 -0.5 +0.3 +0.3 N.D. -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 +0.6 -0.1 N.D. -1.1
mixed community RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x +0.6 -0.1 -0.2 N.D. -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.5 -0.7 N.D. +0.6
stress Paraquat dichloride 0.1 mg/ml -0.6 -0.3 -0.6 N.D. +1.0
carbon source Gly-Glu (C) -0.1 -0.7 +1.2 N.D. -0.5
phage KLEB1 MOI 10 +0.8 +0.3 +0.1 N.D. -1.0
carbon source 2-Deoxyadenosine 4 mM (C) +0.6 +0.5 +0.3 N.D. -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +0.4 +0.1 N.D. -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.3 +0.4 -0.2 N.D. -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 +0.3 +0.8 N.D. +0.7
stress Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM +0.6 +0.3 -0.4 N.D. +1.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 +0.2 +0.0 N.D. +2.4
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BWI76_RS09400
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BWI76_RS09405
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BWI76_RS09420
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