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Fitness for 5 genes in
Klebsiella michiganensis M5al
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BWI76_RS09025 and BWI76_RS09030 are separated by 43 nucleotides
BWI76_RS09030 and BWI76_RS09035 are separated by 190 nucleotides
BWI76_RS09035 and BWI76_RS09040 are separated by 177 nucleotides
BWI76_RS09040 and BWI76_RS09045 are separated by 168 nucleotides
BWI76_RS09025: BWI76_RS09025 - GntR family transcriptional regulator, at 1,901,544 to 1,902,260
_RS09025
BWI76_RS09030: BWI76_RS09030 - transpeptidase, at 1,902,304 to 1,903,218
_RS09030
BWI76_RS09035: BWI76_RS09035 - protein tyrosine/serine phosphatase, at 1,903,409 to 1,904,191
_RS09035
BWI76_RS09040: BWI76_RS09040 - ABC-F family ATPase, at 1,904,369 to 1,905,961
_RS09040
BWI76_RS09045: BWI76_RS09045 - alpha-glucosidase, at 1,906,130 to 1,908,493
_RS09045
Group
Condition
BWI76
_RS09025
BWI76
_RS09030
BWI76
_RS09035
BWI76
_RS09040
BWI76
_RS09045
stress
Fungal_growth_media_mCAFEs_v1 with Phosphomycin 0.01 mg/mL
+0.6
-4.6
+0.2
-0.4
-0.0
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
-2.5
-1.6
-0.0
-0.1
+0.1
carbon source
D,L-Malic Acid (C)
+0.1
-3.8
-0.2
-0.0
+0.0
mixed community
RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
-2.1
-1.5
-0.2
-0.0
+0.0
nitrogen source
Casamino Acids (N)
-3.1
-0.7
-0.0
+0.2
-0.1
phage
K. M5a1 KLEB26 MOI 0.1
-0.4
-0.7
-1.9
-0.1
-0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
-1.0
-2.2
-0.3
+0.1
+0.2
nitrogen source
Uridine (N)
-0.7
-0.9
-0.3
-0.6
-0.6
mixed community
RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
-0.2
-1.2
-0.5
-1.1
+0.2
carbon source
D,L-Malic Acid (C)
-0.2
-3.0
+0.3
+0.2
+0.0
stress
Fungal_growth_media_mCAFEs_v1 with Aluminum chloride 2 mM
-1.2
-1.5
+0.3
+0.1
-0.3
supernatant control
Vogels_fungal_media 0.1X
-1.4
-1.5
+0.2
+0.3
-0.2
mixed community
Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
-1.5
-0.7
+0.5
-0.2
-0.2
carbon source
2-Deoxy-D-ribonic lithium salt 10 mM (C)
-1.0
-1.2
+0.6
-0.3
+0.1
nitrogen source
Uridine (N)
-1.7
-0.7
+0.4
-0.2
+0.4
carbon source
2'-Deoxyinosine 5 mM (C)
-2.3
-0.5
+0.7
+0.1
+0.5
nitrogen source
L-Arginine (N)
-1.6
-0.6
+0.6
+0.4
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.6
+0.2
-0.1
-0.6
+0.8
phage
KLEB17 MOI 1
-0.9
-0.9
+0.4
-0.6
+0.6
nitrogen fixation control
D-Glucose (C) with ammonium chloride; anaerobic; 8 days
+0.9
-2.0
-0.0
+0.1
+0.1
supernatant
Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
-0.3
-1.1
+0.7
+0.6
-0.5
phage
KLEB17 MOI 1
-1.4
-0.1
+0.7
-0.4
+0.6
stress
Sisomicin 0.008 mg/ml
+1.1
-2.0
+0.6
-0.0
-0.2
nitrogen source
L-Arginine (N)
+1.1
-1.3
+0.4
-0.6
+0.5
stress
Sisomicin 0.008 mg/ml
+0.9
-1.4
+1.0
-0.4
+0.6
nitrogen source
Glucuronamide (N)
+1.7
-1.0
+0.1
-0.1
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.6
-0.5
+0.4
-0.6
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+2.4
+0.2
-0.0
-0.3
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
+4.2
-1.2
-0.7
-0.1
+0.1
carbon source
Gly-Glu (C)
+0.2
+0.5
+1.8
-0.7
+0.6
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