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Fitness for 5 genes in
Klebsiella michiganensis M5al
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BWI76_RS08960 and BWI76_RS08965 are separated by 110 nucleotides
BWI76_RS08965 and BWI76_RS08970 overlap by 4 nucleotides
BWI76_RS08970 and BWI76_RS08975 are separated by 134 nucleotides
BWI76_RS08975 and BWI76_RS08980 are separated by 376 nucleotides
BWI76_RS08960: BWI76_RS08960 - mechanosensitive channel protein, at 1,887,562 to 1,889,772
_RS08960
BWI76_RS08965: BWI76_RS08965 - glutamine ABC transporter ATP-binding protein, at 1,889,883 to 1,890,605
_RS08965
BWI76_RS08970: BWI76_RS08970 - glutamine ABC transporter permease GlnP, at 1,890,602 to 1,891,261
_RS08970
BWI76_RS08975: BWI76_RS08975 - amino acid ABC transporter substrate-binding protein, at 1,891,396 to 1,892,142
_RS08975
BWI76_RS08980: BWI76_RS08980 - DNA starvation/stationary phase protection protein, at 1,892,519 to 1,893,022
_RS08980
Group
Condition
BWI76
_RS08960
BWI76
_RS08965
BWI76
_RS08970
BWI76
_RS08975
BWI76
_RS08980
carbon source
L-Glutamine (C)
-0.2
-2.1
-1.4
-2.4
-1.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
+0.0
-0.6
+0.1
-4.4
phage
KLEB15 MOI 1
-0.2
-0.2
-0.5
-0.4
-2.2
stress
perchlorate 100 mM
-0.1
+0.2
-0.4
-0.5
-2.4
stress
Paraquat dichloride 0.1 mg/ml
-0.2
+0.1
-0.5
-0.2
-2.4
nitrogen source
L-Cysteine (N)
+0.6
-0.1
-0.6
-0.3
-2.3
carbon source
L-Lactate (C)
+0.2
-0.5
+0.2
-0.4
-2.3
carbon source
2-Deoxyadenosine 5-monophosphate 5 mM (C)
-0.5
+0.7
-1.4
-1.6
+0.4
stress
nitrite 20 mM
+0.1
-0.3
+0.6
-0.8
-2.2
stress
Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
-0.0
+0.5
-0.6
-0.5
-1.8
carbon source
Glycerol (C)
+0.2
-0.3
-0.7
+0.4
-1.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.3
-0.1
+0.2
-2.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
-0.0
-0.1
-2.2
+0.4
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
+0.4
+0.7
-1.0
-0.5
-1.0
mixed community
RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
+0.1
+0.8
+0.8
-0.4
-2.1
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM
+0.4
-0.4
-1.3
+0.8
-0.2
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
+0.3
-0.6
-1.2
+1.3
-0.2
mixed community
LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
+0.1
-0.2
+0.9
+0.5
-1.4
mixed community
LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
-0.0
+0.4
+0.2
-1.4
+1.3
nitrogen source
Gly-DL-Asp (N)
+0.1
+0.0
+0.8
-2.1
+1.6
phage
KLEB24 MOI 1
+0.1
-0.1
+1.0
-0.8
+1.1
phage
KLEB29 MOI 1
-0.1
+0.3
+0.8
-0.7
+1.2
phage
B3 MOi 10
-0.2
+0.1
+0.5
-0.5
+2.0
carbon source
Gly-Glu (C)
-0.4
-0.4
+2.8
+0.6
-0.6
nitrogen source
D-Alanine (N)
+0.1
+0.3
+1.2
-0.8
+1.3
phage
KLEB15 MOI 0.1
-0.0
+0.3
+1.0
-0.7
+1.5
nitrogen source
L-tyrosine (N)
+0.3
+0.7
+0.4
-0.3
+1.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.0
+0.6
+0.6
+1.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.1
+2.0
+0.4
-0.1
+0.5
phage
KLEB1 MOI 10
+0.3
+0.4
+0.2
+0.8
+1.5
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