Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS08725 and BWI76_RS08730 are separated by 53 nucleotidesBWI76_RS08730 and BWI76_RS08735 are separated by 143 nucleotidesBWI76_RS08735 and BWI76_RS08740 overlap by 4 nucleotidesBWI76_RS08740 and BWI76_RS08745 are separated by 100 nucleotides BWI76_RS08725: BWI76_RS08725 - Formiminoglutamase (EC 3.5.3.8) (from data), at 1,837,820 to 1,838,776 _RS08725 BWI76_RS08730: BWI76_RS08730 - histidine utilization repressor, at 1,838,830 to 1,839,555 _RS08730 BWI76_RS08735: BWI76_RS08735 - Urocanate hydratase (EC 4.2.1.49) (from data), at 1,839,699 to 1,841,387 _RS08735 BWI76_RS08740: BWI76_RS08740 - Histidine ammonia-lyase (EC 4.3.1.3) (from data), at 1,841,384 to 1,842,907 _RS08740 BWI76_RS08745: BWI76_RS08745 - proline-specific permease, at 1,843,008 to 1,844,387 _RS08745
Group Condition BWI76_RS08725 BWI76_RS08730 BWI76_RS08735 BWI76_RS08740 BWI76_RS08745
nitrogen source L-Histidine (N) -4.0 +0.4 -4.1 -4.8 -0.2
nitrogen source L-Histidine (N) -4.1 +0.9 -4.7 -3.8 +0.4
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB -6.8 -1.0 -0.3 -0.6 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -2.3 -0.1 +0.1 -0.4 -0.7
stress Nickel (II) chloride 1.5 mM +0.2 -3.7 +0.4 +0.0 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.0 -0.0 -0.2 -0.3 -0.4
stress Nickel (II) chloride 1.5 mM +0.1 -3.2 +0.0 +0.1 +0.1
ecofab RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL -0.5 -0.9 -0.8 -0.4 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.2 +0.3 -0.7 +0.4 -1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -2.3 +0.9 -0.1 -0.4 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.8 +0.5 -0.2 -0.4 -0.1
phage KLEB1 MOI 10 -0.1 -1.3 -0.9 -0.3 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.5 -0.2 +0.1 -0.6 +0.3
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.4 -1.6 -0.2 +0.2 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.0 +0.6 -0.2 -0.2 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB -2.5 +0.2 +0.0 +0.1 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.8 +0.2 -0.0 -0.3 +0.4
carbon source succinate (C) +0.4 -2.7 +0.0 +0.4 +0.4
carbon source 2-Deoxyadenosine 4 mM (C) -0.3 -1.2 -0.1 -0.5 +0.6
carbon source succinate (C) +0.0 -1.6 +0.8 -0.2 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 +0.7 +0.6 -0.2 -1.0
micoeukaryotes Dictyostellum sp.mixed culture-1 +1.0 -0.7 -0.5 +0.2 -0.5
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x -0.6 +0.2 +0.7 +0.3 -0.8
stress Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM +0.3 -1.1 +0.8 +0.2 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.6 +0.4 +0.9 +0.3 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 +1.0 +0.1 -0.4 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.1 +1.0 -0.0 -0.0 +0.6
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.8 -0.8 +0.3 +0.6 -0.2
exudates RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x +0.7 +0.3 +0.6 +0.9 +1.0
carbon source L-Glutamine (C) -0.6 +6.9 +0.6 +0.1 -0.4
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