Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS08605 and BWI76_RS08610 are separated by 328 nucleotidesBWI76_RS08610 and BWI76_RS08615 overlap by 7 nucleotidesBWI76_RS08615 and BWI76_RS08620 are separated by 2 nucleotidesBWI76_RS08620 and BWI76_RS08625 are separated by 9 nucleotides BWI76_RS08605: BWI76_RS08605 - phosphoglyceromutase, at 1,815,003 to 1,815,755 _RS08605 BWI76_RS08610: BWI76_RS08610 - galactose-1-epimerase, at 1,816,084 to 1,817,127 _RS08610 BWI76_RS08615: BWI76_RS08615 - galactokinase, at 1,817,121 to 1,818,269 _RS08615 BWI76_RS08620: BWI76_RS08620 - galactose-1-phosphate uridylyltransferase, at 1,818,272 to 1,819,318 _RS08620 BWI76_RS08625: BWI76_RS08625 - UDP-glucose 4-epimerase GalE, at 1,819,328 to 1,820,339 _RS08625
Group Condition BWI76_RS08605 BWI76_RS08610 BWI76_RS08615 BWI76_RS08620 BWI76_RS08625
phage K. M5a1 KLEB26 MOI 0.1 -5.6 +0.3 +0.5 -1.2 -0.8
micoeukaryotes Tetrahymena sp., Mixed culture-1 -4.9 -0.1 -0.3 -1.1 -0.3
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -5.5 -0.0 -0.9 -0.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.6 -0.7 -2.3 -1.0 -0.5
phage KLEB14 MOI 0.1 -1.6 +0.5 -1.1 -2.9 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.2 -0.3 -2.0 -0.1 -0.5
stress Nickel (II) chloride 1.5 mM -4.5 -0.5 -0.1 -0.4 +0.6
stress Nickel (II) chloride 1.5 mM -3.4 -0.2 -0.6 -0.2 -0.3
ecofab RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL -1.7 +0.0 -1.2 -0.6 -0.9
stress Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM -4.1 +0.1 +0.4 +0.5 -0.9
exudates RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x -3.8 -0.0 -0.5 +0.3 +0.5
mixed community RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x -4.2 -0.1 +0.2 +0.5 +0.1
phage KLEB26 MOI0.1 -0.6 +1.0 -2.2 -1.7 +0.0
stress Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM -4.4 -0.0 +0.8 +0.2 -0.0
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x -4.2 +0.3 +1.0 +0.6 -0.3
mixed community LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL -4.4 +0.2 +0.9 +0.2 +0.7
phage KLEB16 MOI 0.1 +1.6 +0.3 -1.5 -1.5 +0.2
stress Sisomicin 0.008 mg/ml +1.9 +0.5 -1.3 -2.3 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 -0.6 -1.9 -0.4 +1.8
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 -0.2 +0.1 +2.8 -1.1
phage K. M5a1 KLEB22 MOI 1 -0.9 -0.0 +2.1 +1.7 +0.1
phage K. M5a1 KLEB23 MOI 1 +0.1 -0.4 +2.3 +1.6 -0.3
phage K. M5a1 KLEB23 MOI 10 +0.2 +0.1 +2.5 +1.6 -0.8
phage K. M5a1 KLEB22 MOI 10 +0.2 +0.5 +1.9 +1.9 -0.6
ecofab LB in EcoFAB_3.5mL with sand +0.2 -0.3 +2.2 +1.7 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +0.1 +3.2 +0.5 +0.2
ecofab LB in EcoFAB_10mL EcoFab with sand +0.4 -0.5 +2.9 +2.0 +0.4
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB -3.1 -0.1 +7.1 +5.6 +0.9
carbon source D-Raffinose (C) -0.0 +2.0 +5.0 +4.5 +7.4
carbon source D-Raffinose (C) +0.3 +2.0 +7.7 +5.4 +7.6
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