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Fitness for 5 genes in
Klebsiella michiganensis M5al
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BWI76_RS08015 and BWI76_RS08020 are separated by 106 nucleotides
BWI76_RS08020 and BWI76_RS08025 are separated by 142 nucleotides
BWI76_RS08025 and BWI76_RS08030 are separated by 10 nucleotides
BWI76_RS08030 and BWI76_RS08035 overlap by 1 nucleotides
BWI76_RS08015: BWI76_RS08015 - hypothetical protein, at 1,699,202 to 1,699,465
_RS08015
BWI76_RS08020: BWI76_RS08020 - serine-type D-Ala-D-Ala carboxypeptidase, at 1,699,572 to 1,700,771
_RS08020
BWI76_RS08025: BWI76_RS08025 - septal ring lytic transglycosylase RlpA, at 1,700,914 to 1,702,014
_RS08025
BWI76_RS08030: BWI76_RS08030 - cell wall shape-determining protein, at 1,702,025 to 1,703,137
_RS08030
BWI76_RS08035: BWI76_RS08035 - penicillin-binding protein 2, at 1,703,137 to 1,705,038
_RS08035
Group
Condition
BWI76
_RS08015
BWI76
_RS08020
BWI76
_RS08025
BWI76
_RS08030
BWI76
_RS08035
mixed community
LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
N.D.
-3.2
-1.3
N.D.
N.D.
mixed community
LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL
N.D.
-3.5
-0.4
N.D.
N.D.
mixed community
LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
N.D.
-2.4
-0.8
N.D.
N.D.
carbon source
RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x
N.D.
-2.8
-0.4
N.D.
N.D.
mixed community
LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
N.D.
-2.5
-0.5
N.D.
N.D.
mixed community
LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
N.D.
-2.7
-0.2
N.D.
N.D.
mixed community
RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
N.D.
-1.6
-1.3
N.D.
N.D.
mixed community
LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
N.D.
-2.2
-0.6
N.D.
N.D.
stress
Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
N.D.
-2.4
-0.4
N.D.
N.D.
mixed community
Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
N.D.
-1.7
-0.8
N.D.
N.D.
phage
KLEB14 MOI 0.1
N.D.
-1.8
-0.7
N.D.
N.D.
mixed community
RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
N.D.
-2.4
-0.0
N.D.
N.D.
mixed community
LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
N.D.
-2.2
-0.2
N.D.
N.D.
control
NoPredeControl
N.D.
-1.6
-0.8
N.D.
N.D.
mixed community
RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
N.D.
-2.4
-0.0
N.D.
N.D.
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
N.D.
-1.3
-1.1
N.D.
N.D.
mixed community
LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
N.D.
-2.2
-0.1
N.D.
N.D.
phage
KP2_E1_R2_2
N.D.
-2.1
-0.1
N.D.
N.D.
mixed community
RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
N.D.
-2.2
-0.0
N.D.
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
N.D.
-1.7
-0.6
N.D.
N.D.
mixed community
RCH2_defined_noCarbon with Mixed culture; Escherichia coli BW25113 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
N.D.
-2.1
-0.1
N.D.
N.D.
mixed community
LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
N.D.
-1.9
-0.3
N.D.
N.D.
mixed community
RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
N.D.
-2.0
-0.1
N.D.
N.D.
stress
Fungal_growth_media_mCAFEs_v1 with Phosphomycin 0.01 mg/mL
N.D.
-1.5
-0.6
N.D.
N.D.
mixed community
Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
N.D.
-1.1
-1.0
N.D.
N.D.
phage
KP2_E1_R2_1
N.D.
-2.2
+0.4
N.D.
N.D.
stress
copper (II) chloride 2 mM
N.D.
-1.5
+0.7
N.D.
N.D.
phage
RM14
N.D.
-0.9
+1.4
N.D.
N.D.
phage
K. M5a1 KLEB22 MOI 10
N.D.
+0.8
+1.3
N.D.
N.D.
lb
LB
N.D.
+2.2
+0.3
N.D.
N.D.
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