Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS07665 and BWI76_RS07670 are separated by 133 nucleotidesBWI76_RS07670 and BWI76_RS07675 are separated by 363 nucleotidesBWI76_RS07675 and BWI76_RS07680 are separated by 364 nucleotidesBWI76_RS07680 and BWI76_RS07685 overlap by 8 nucleotides BWI76_RS07665: BWI76_RS07665 - ABC transporter substrate-binding protein, at 1,623,071 to 1,624,006 _RS07665 BWI76_RS07670: BWI76_RS07670 - carbohydrate kinase, at 1,624,140 to 1,625,660 _RS07670 BWI76_RS07675: BWI76_RS07675 - DeoR family transcriptional regulator, at 1,626,024 to 1,626,974 _RS07675 BWI76_RS07680: BWI76_RS07680 - transketolase, at 1,627,339 to 1,628,169 _RS07680 BWI76_RS07685: BWI76_RS07685 - transketolase, at 1,628,162 to 1,629,097 _RS07685
Group Condition BWI76_RS07665 BWI76_RS07670 BWI76_RS07675 BWI76_RS07680 BWI76_RS07685
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB -0.2 -0.1 -6.2 -1.2 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.2 +0.2 -5.0 +0.3 N.D.
carbon source succinate (C) +0.1 +0.1 -4.1 +0.2 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -0.4 +0.2 -2.4 -1.0 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.0 -0.1 -3.1 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 -0.4 -1.9 -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +0.0 -2.0 -0.7 N.D.
carbon source D-Lactate (C) -0.1 +0.1 -2.7 +0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.0 -0.1 -2.0 -0.6 N.D.
carbon source D-Alanine (C) -0.0 +0.0 -2.9 +0.2 N.D.
carbon source succinate (C) -0.1 +0.1 -2.9 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 -0.4 -1.1 -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 +0.1 -2.4 -0.2 N.D.
carbon source D-Alanine (C) +0.0 -0.0 -2.6 +0.3 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x -0.0 -0.0 -2.0 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.0 +0.1 -1.6 -0.6 N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.5 -1.4 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 -0.0 -1.4 -0.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +0.1 -1.2 -1.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.0 -1.4 -0.6 N.D.
carbon source Gly-Glu (C) +0.1 +0.3 -2.7 +0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 +0.6 -1.4 -0.8 N.D.
carbon source L-Glutamine (C) -0.0 +0.1 -1.9 +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.0 -1.5 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 +0.4 -1.0 -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 +0.3 -2.2 +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.1 -1.3 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 +0.5 -1.3 -0.5 N.D.
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x -0.1 +0.1 -1.3 +0.9 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.0 +0.3 -1.3 +0.5 N.D.
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