Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS06980 and BWI76_RS06985 are separated by 91 nucleotidesBWI76_RS06985 and BWI76_RS06990 are separated by 88 nucleotidesBWI76_RS06990 and BWI76_RS06995 are separated by 13 nucleotidesBWI76_RS06995 and BWI76_RS07000 are separated by 97 nucleotides BWI76_RS06980: BWI76_RS06980 - ureidoglycolate lyase, at 1,466,195 to 1,466,677 _RS06980 BWI76_RS06985: BWI76_RS06985 - transcriptional regulator, at 1,466,769 to 1,467,587 _RS06985 BWI76_RS06990: BWI76_RS06990 - glyoxylate carboligase, at 1,467,676 to 1,469,457 _RS06990 BWI76_RS06995: BWI76_RS06995 - hydroxypyruvate isomerase, at 1,469,471 to 1,470,247 _RS06995 BWI76_RS07000: BWI76_RS07000 - 2-hydroxy-3-oxopropionate reductase, at 1,470,345 to 1,471,223 _RS07000
Group Condition BWI76_RS06980 BWI76_RS06985 BWI76_RS06990 BWI76_RS06995 BWI76_RS07000
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB -0.1 N.D. -0.2 -0.8 -0.9
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -1.1 N.D. -0.3 -0.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.1 N.D. +0.0 -0.2 -0.2
nitrogen source Glucuronamide (N) -0.9 N.D. -0.0 -0.4 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -1.0 N.D. +0.0 +0.1 -0.2
mixed community RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.3 N.D. -0.1 -0.7 -0.5
phage K. M5a1 KLEB26 MOI 0.1 -0.2 N.D. +0.3 -0.4 -0.7
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x -1.0 N.D. +0.1 +0.3 +0.0
mixed community RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.4 N.D. -0.0 -0.6 -0.4
mixed community RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.5 N.D. -0.0 -0.6 -0.3
mixed community RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.5 N.D. -0.0 -0.5 -0.4
nitrogen source Glucuronamide (N) -0.4 N.D. +0.3 -0.5 +0.2
mixed community RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.4 N.D. +0.1 -0.6 -0.3
mixed community RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.3 N.D. +0.2 -0.8 -0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.8 N.D. +0.2 +0.4 +0.0
mixed community RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x +0.5 N.D. +0.0 -0.5 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 N.D. +0.4 +0.0 +0.1
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x +0.2 N.D. +0.1 -0.7 +0.3
carbon source RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 0.1 x +0.7 N.D. +0.0 -0.5 -0.3
mixed community RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x +0.7 N.D. -0.0 -0.5 -0.3
stress Sisomicin 0.008 mg/ml -0.3 N.D. +0.7 -0.4 -0.1
mixed community RCH2_defined_noCarbon with Mixed culture; Escherichia coli BW25113 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x +0.6 N.D. +0.2 -0.6 -0.3
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days +0.8 N.D. -0.4 -0.3 -0.1
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and Iron (II) 0.002 mg/ml +0.7 N.D. +0.2 -0.4 -0.2
rhizosphere rhizosphere sample 1; outgrowth in LB +0.5 N.D. +0.5 -0.7 -0.0
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.5 N.D. +0.5 +0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.7 N.D. +0.4 +0.7 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +5.1 N.D. +0.1 +0.0 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +5.0 N.D. +0.1 +0.4 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +6.8 N.D. -0.3 +0.0 -0.1
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