Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS05650 and BWI76_RS05655 are separated by 583 nucleotidesBWI76_RS05655 and BWI76_RS05660 are separated by 10 nucleotidesBWI76_RS05660 and BWI76_RS05665 are separated by 17 nucleotidesBWI76_RS05665 and BWI76_RS05670 are separated by 103 nucleotides BWI76_RS05650: BWI76_RS05650 - mannonate dehydratase, at 1,186,395 to 1,187,579 _RS05650 BWI76_RS05655: BWI76_RS05655 - hypothetical protein, at 1,188,163 to 1,188,420 _RS05655 BWI76_RS05660: BWI76_RS05660 - N-acetyltransferase, at 1,188,431 to 1,188,982 _RS05660 BWI76_RS05665: BWI76_RS05665 - SAM-dependent methyltransferase, at 1,189,000 to 1,190,628 _RS05665 BWI76_RS05670: BWI76_RS05670 - porin, at 1,190,732 to 1,192,072 _RS05670
Group Condition BWI76_RS05650 BWI76_RS05655 BWI76_RS05660 BWI76_RS05665 BWI76_RS05670
exudates RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x -0.6 -1.8 -0.2 +0.2 -0.2
phage KLEB17 MOI 1 +0.2 -1.7 -0.1 +0.1 -0.3
mixed community RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.1 -2.4 -0.2 +0.3 +0.3
mixed community LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL +0.0 -1.4 -0.2 +0.1 +0.3
ecofab RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL -0.4 -1.0 +0.4 +0.2 +0.3
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.1 -1.2 +0.3 +0.0 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 -0.8 +0.6 -0.3 +0.2
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.2 -1.2 +0.3 +0.7 -0.0
phage KLEB1 MOI 10 +0.4 +0.7 -0.2 +0.1 -0.8
nitrogen source Gly-DL-Asp (N) +0.2 +0.5 +0.6 -0.7 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.5 +0.1 -0.7 +0.7
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x +0.3 -0.7 -0.1 +0.4 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +0.4 +0.0 +0.7 -0.7
phage KLEB31 MOI 1 -0.2 +1.1 -0.5 +0.2 +0.0
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB +0.0 -0.5 +0.4 +0.9 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.1 +0.9 +0.3 -0.5 +0.2
nitrogen source L-Cysteine (N) +0.0 +0.7 +0.4 +0.3 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 +1.2 +0.1 -0.7 +0.1
nitrogen source Cytosine (N) -0.3 +1.2 +0.2 +0.4 -0.5
mixed community Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL +0.2 +1.3 -0.3 -0.1 +0.0
stress Chloramphenicol 0.001 mg/ml +0.0 +0.9 +0.9 -0.3 -0.2
nitrogen source Glucuronamide (N) -0.1 +1.2 +0.6 +0.1 -0.2
stress copper (II) chloride 2 mM +0.1 +1.6 +0.2 +0.3 -0.5
nitrogen source Thymine (N) -0.2 +1.2 -0.2 +0.7 +0.1
nitrogen source nitrate (N) -0.1 +1.8 +0.0 +0.4 -0.2
nitrogen source L-Arginine (N) -0.0 +1.5 +0.0 +0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.8 +1.1 -0.3 +0.1 +0.3
stress Chlorite 2.5 mM -0.0 +2.0 -0.1 -0.1 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +2.2 +0.1 +0.2 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +2.6 +0.4 +0.6 -0.2
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