Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS05530 and BWI76_RS05535 are separated by 2 nucleotidesBWI76_RS05535 and BWI76_RS05540 are separated by 111 nucleotidesBWI76_RS05540 and BWI76_RS05545 are separated by 258 nucleotidesBWI76_RS05545 and BWI76_RS05550 are separated by 106 nucleotides BWI76_RS05530: BWI76_RS05530 - DNA polymerase IV, at 1,158,943 to 1,159,998 _RS05530 BWI76_RS05535: BWI76_RS05535 - acyltransferase, at 1,160,001 to 1,160,492 _RS05535 BWI76_RS05540: BWI76_RS05540 - cytosol nonspecific dipeptidase, at 1,160,604 to 1,162,061 _RS05540 BWI76_RS05545: BWI76_RS05545 - xanthine phosphoribosyltransferase, at 1,162,320 to 1,162,778 _RS05545 BWI76_RS05550: BWI76_RS05550 - fermentation/respiration switch protein, at 1,162,885 to 1,164,129 _RS05550
Group Condition BWI76_RS05530 BWI76_RS05535 BWI76_RS05540 BWI76_RS05545 BWI76_RS05550
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB -0.4 N.D. -0.8 N.D. -2.0
carbon source Gly-Glu (C) +1.1 N.D. -4.1 N.D. +0.2
phage KLEB1 MOI 0.1 -0.8 N.D. -0.9 N.D. -0.4
phage KLEB1 MOI 10 -1.2 N.D. -0.4 N.D. -0.2
rhizosphere rhizosphere sample 1; outgrowth in LB -0.4 N.D. -0.6 N.D. -0.8
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.0 N.D. -0.6 N.D. -0.9
phage KLEB20 MOI 0.1 -0.4 N.D. -0.6 N.D. -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.8 N.D. -0.6 N.D. +0.0
nitrogen source Cytosine (N) -0.1 N.D. -0.5 N.D. -0.6
mixed community LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL -0.8 N.D. +0.1 N.D. -0.4
phage KLEB1 MOI 0.1 -0.7 N.D. -0.5 N.D. +0.0
mixed community RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x -0.6 N.D. +0.2 N.D. -0.6
phage KLEB17 MOI 1 -0.1 N.D. -1.1 N.D. +0.3
stress Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL -0.6 N.D. +0.3 N.D. -0.6
mixed community RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x -0.7 N.D. +0.2 N.D. -0.3
phage KLEB17 MOI 1 -0.7 N.D. -0.6 N.D. +0.4
mixed community LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL -0.6 N.D. +0.2 N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 N.D. -0.4 N.D. +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.5 N.D. -0.5 N.D. -0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -0.3 N.D. -0.4 N.D. +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 N.D. -0.2 N.D. +0.7
nitrogen source Gly-DL-Asp (N) +0.2 N.D. -0.6 N.D. +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 N.D. -0.4 N.D. +0.1
stress Paraquat dichloride 0.1 mg/ml -0.1 N.D. -0.3 N.D. +0.9
nitrogen source Thymine (N) +0.7 N.D. -0.4 N.D. +0.2
stress RCH2_defined_1percent_glucose with Chloride 600 mM -0.2 N.D. +0.9 N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 N.D. -0.5 N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 N.D. -0.2 N.D. +0.5
phage KLEB29 MOI 1 +0.3 N.D. +0.9 N.D. +0.3
phage KLEB29 MOI 1 +0.5 N.D. +0.9 N.D. +0.1
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