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Fitness for 5 genes in
Klebsiella michiganensis M5al
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BWI76_RS04555 and BWI76_RS04560 are separated by 168 nucleotides
BWI76_RS04560 and BWI76_RS04565 are separated by 81 nucleotides
BWI76_RS04565 and BWI76_RS04570 are separated by 12 nucleotides
BWI76_RS04570 and BWI76_RS04575 are separated by 187 nucleotides
BWI76_RS04555: BWI76_RS04555 - citrate/acetate antiporter, at 943,966 to 945,321
_RS04555
BWI76_RS04560: BWI76_RS04560 - holo-ACP synthase CitX, at 945,490 to 946,029
_RS04560
BWI76_RS04565: BWI76_RS04565 - bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA, at 946,111 to 946,770
_RS04565
BWI76_RS04570: BWI76_RS04570 - RNA polymerase-associated protein RapA, at 946,783 to 949,689
_RS04570
BWI76_RS04575: BWI76_RS04575 - DNA polymerase II, at 949,877 to 952,234
_RS04575
Group
Condition
BWI76
_RS04555
BWI76
_RS04560
BWI76
_RS04565
BWI76
_RS04570
BWI76
_RS04575
nitrogen source
D-Alanine (N)
+0.4
+0.6
-3.6
-1.5
+0.1
phage
KP1_E1_R2_1
+0.1
-0.7
-1.7
-0.9
+0.3
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
+0.1
-0.6
-0.9
-1.2
-0.2
nitrogen source
Uridine (N)
+0.0
-1.2
-1.0
-0.5
-0.1
phage
Roth35v2
-0.2
-0.1
-1.1
-0.8
-0.3
phage
MM16
-0.1
-0.3
+0.1
-2.3
+0.1
nitrogen source
L-Phenylalanine (N)
+0.4
-0.8
-0.4
-1.4
+0.1
nitrogen source
L-Asparagine (N)
+0.1
-0.8
-0.8
-0.7
+0.1
micoeukaryotes
Dictyostellum sp.mixed culture-1
-0.1
-0.4
-1.1
-0.8
+0.5
nitrogen source
L-Lysine (N)
-0.0
+0.7
-1.0
-1.4
-0.1
nitrogen source
Glucuronamide (N)
+0.0
+0.2
-1.2
-0.7
+0.4
carbon source
Trisodium citrate (C)
-1.7
+0.5
+0.3
-0.4
+0.1
carbon source
Trisodium citrate (C)
-1.6
+0.5
+0.2
-0.3
+0.1
rhizosphere
rhizosphere sample 1; outgrowth in LB
+0.0
+0.1
+0.9
-2.4
+0.3
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
+0.2
-0.3
+0.4
-1.6
+0.4
phage
KP2_E1_R2_2
-0.1
-0.1
-1.7
+1.4
-0.2
phage
KLEB30 MOI 1
+0.2
-1.2
+0.1
+1.0
-0.0
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
+0.2
+1.1
+0.3
-1.1
-0.2
ecofab
RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL
-0.1
+0.4
+0.7
-1.2
+0.5
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
+0.2
+1.3
-0.2
-0.7
+0.1
stress
Sisomicin 0.008 mg/ml
+0.1
-0.6
-0.9
+1.9
+0.3
phage
KP2_E1_R2_1
-0.0
+0.1
-0.7
+1.7
-0.2
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
+0.2
+0.5
+1.6
-1.3
-0.0
phage
KLEB29 MOI 1
+0.3
-0.7
+0.9
+0.7
-0.2
supernatant
Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
+0.0
+1.3
+0.6
-0.6
+0.1
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
+0.2
+0.9
+1.2
-0.4
-0.1
phage
RM14
+0.1
-1.4
+0.3
+2.2
+0.4
phage
KLEB29 MOI 1
+0.2
+0.8
+0.4
+0.9
-0.3
stress
Sisomicin 0.008 mg/ml
-0.2
+1.1
-0.2
+1.4
+0.3
mixed community
Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
-0.1
+1.1
+0.6
+0.3
+0.5
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