Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS04555 and BWI76_RS04560 are separated by 168 nucleotidesBWI76_RS04560 and BWI76_RS04565 are separated by 81 nucleotidesBWI76_RS04565 and BWI76_RS04570 are separated by 12 nucleotidesBWI76_RS04570 and BWI76_RS04575 are separated by 187 nucleotides BWI76_RS04555: BWI76_RS04555 - citrate/acetate antiporter, at 943,966 to 945,321 _RS04555 BWI76_RS04560: BWI76_RS04560 - holo-ACP synthase CitX, at 945,490 to 946,029 _RS04560 BWI76_RS04565: BWI76_RS04565 - bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA, at 946,111 to 946,770 _RS04565 BWI76_RS04570: BWI76_RS04570 - RNA polymerase-associated protein RapA, at 946,783 to 949,689 _RS04570 BWI76_RS04575: BWI76_RS04575 - DNA polymerase II, at 949,877 to 952,234 _RS04575
Group Condition BWI76_RS04555 BWI76_RS04560 BWI76_RS04565 BWI76_RS04570 BWI76_RS04575
nitrogen source D-Alanine (N) +0.4 +0.6 -3.6 -1.5 +0.1
phage KP1_E1_R2_1 +0.1 -0.7 -1.7 -0.9 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.1 -0.6 -0.9 -1.2 -0.2
nitrogen source Uridine (N) +0.0 -1.2 -1.0 -0.5 -0.1
phage Roth35v2 -0.2 -0.1 -1.1 -0.8 -0.3
phage MM16 -0.1 -0.3 +0.1 -2.3 +0.1
nitrogen source L-Phenylalanine (N) +0.4 -0.8 -0.4 -1.4 +0.1
nitrogen source L-Asparagine (N) +0.1 -0.8 -0.8 -0.7 +0.1
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.1 -0.4 -1.1 -0.8 +0.5
nitrogen source L-Lysine (N) -0.0 +0.7 -1.0 -1.4 -0.1
nitrogen source Glucuronamide (N) +0.0 +0.2 -1.2 -0.7 +0.4
carbon source Trisodium citrate (C) -1.7 +0.5 +0.3 -0.4 +0.1
carbon source Trisodium citrate (C) -1.6 +0.5 +0.2 -0.3 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB +0.0 +0.1 +0.9 -2.4 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X +0.2 -0.3 +0.4 -1.6 +0.4
phage KP2_E1_R2_2 -0.1 -0.1 -1.7 +1.4 -0.2
phage KLEB30 MOI 1 +0.2 -1.2 +0.1 +1.0 -0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM +0.2 +1.1 +0.3 -1.1 -0.2
ecofab RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL -0.1 +0.4 +0.7 -1.2 +0.5
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x +0.2 +1.3 -0.2 -0.7 +0.1
stress Sisomicin 0.008 mg/ml +0.1 -0.6 -0.9 +1.9 +0.3
phage KP2_E1_R2_1 -0.0 +0.1 -0.7 +1.7 -0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.2 +0.5 +1.6 -1.3 -0.0
phage KLEB29 MOI 1 +0.3 -0.7 +0.9 +0.7 -0.2
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x +0.0 +1.3 +0.6 -0.6 +0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.2 +0.9 +1.2 -0.4 -0.1
phage RM14 +0.1 -1.4 +0.3 +2.2 +0.4
phage KLEB29 MOI 1 +0.2 +0.8 +0.4 +0.9 -0.3
stress Sisomicin 0.008 mg/ml -0.2 +1.1 -0.2 +1.4 +0.3
mixed community Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL -0.1 +1.1 +0.6 +0.3 +0.5
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