Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS04345 and BWI76_RS04350 are separated by 54 nucleotidesBWI76_RS04350 and BWI76_RS04355 are separated by 1 nucleotidesBWI76_RS04355 and BWI76_RS04360 are separated by 65 nucleotidesBWI76_RS04360 and BWI76_RS04365 are separated by 29 nucleotides BWI76_RS04345: BWI76_RS04345 - signal peptidase II, at 895,864 to 896,364 _RS04345 BWI76_RS04350: BWI76_RS04350 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 896,419 to 896,868 _RS04350 BWI76_RS04355: BWI76_RS04355 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 896,870 to 897,820 _RS04355 BWI76_RS04360: BWI76_RS04360 - ribonucleoside hydrolase RihC, at 897,886 to 898,800 _RS04360 BWI76_RS04365: BWI76_RS04365 - LysR family transcriptional regulator, at 898,830 to 899,768 _RS04365
Group Condition BWI76_RS04345 BWI76_RS04350 BWI76_RS04355 BWI76_RS04360 BWI76_RS04365
mixed community LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL N.D. N.D. N.D. -0.6 -0.5
phage KLEB20 MOI 0.1 N.D. N.D. N.D. -1.0 -0.1
carbon source D-Xylose (C) N.D. N.D. N.D. -1.0 -0.0
nitrogen source L-Tryptophan (N) N.D. N.D. N.D. -0.8 -0.2
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB N.D. N.D. N.D. -0.0 -0.9
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.7 +0.1
phage KLEB1 MOI 10 N.D. N.D. N.D. -0.7 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. -0.6 +0.3
stress Sisomicin 0.008 mg/ml N.D. N.D. N.D. +0.3 -0.5
mixed community RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x N.D. N.D. N.D. +0.4 -0.6
mixed community RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x N.D. N.D. N.D. +0.5 -0.3
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. N.D. N.D. +0.6 -0.2
stress Cephalothin 0.16 mg/ml N.D. N.D. N.D. +0.6 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. N.D. +0.7 -0.2
stress nitrite 40 mM N.D. N.D. N.D. +0.7 -0.2
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml N.D. N.D. N.D. +1.0 -0.2
phage K. M5a1 KLEB23 MOI 1 N.D. N.D. N.D. +0.7 +0.1
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days N.D. N.D. N.D. +0.7 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. +0.9 -0.0
phage KLEB29 MOI 1 N.D. N.D. N.D. +0.7 +0.3
phage KLEB24 MOI 1 N.D. N.D. N.D. +0.5 +0.5
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. N.D. +0.7 +0.3
stress Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL N.D. N.D. N.D. +1.2 -0.2
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml N.D. N.D. N.D. +0.9 +0.1
stress Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL N.D. N.D. N.D. +1.3 -0.1
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x N.D. N.D. N.D. +1.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. +1.4 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. +1.4 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. +1.7 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. +1.4 +0.4
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