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Fitness for 5 genes in
Klebsiella michiganensis M5al
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BWI76_RS04160 and BWI76_RS04165 are separated by 9 nucleotides
BWI76_RS04165 and BWI76_RS04170 are separated by 21 nucleotides
BWI76_RS04170 and BWI76_RS04175 are separated by 98 nucleotides
BWI76_RS04175 and BWI76_RS04180 overlap by 60 nucleotides
BWI76_RS04160: BWI76_RS04160 - phosphoserine phosphatase, at 855,672 to 856,643
_RS04160
BWI76_RS04165: BWI76_RS04165 - DNA repair protein RadA, at 856,653 to 858,035
_RS04165
BWI76_RS04170: BWI76_RS04170 - trifunctional nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase/transcriptional regulator NadR, at 858,057 to 859,289
_RS04170
BWI76_RS04175: BWI76_RS04175 - energy-dependent translational throttle protein EttA, at 859,388 to 861,055
_RS04175
BWI76_RS04180: BWI76_RS04180 - hypothetical protein, at 860,996 to 861,203
_RS04180
Group
Condition
BWI76
_RS04160
BWI76
_RS04165
BWI76
_RS04170
BWI76
_RS04175
BWI76
_RS04180
nitrogen source
D-Alanine (N)
-8.8
+0.6
-0.4
-0.7
-0.1
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
-9.6
+0.3
-0.2
+0.2
+0.2
carbon source
acetate (C)
-8.5
+0.0
+0.1
-0.4
-0.2
carbon source
succinate (C)
-8.6
-0.5
+0.1
+0.3
-0.1
carbon source
D-Lactate (C)
-7.7
-0.5
+0.2
-0.6
-0.3
carbon source
D-Alanine (C)
-7.4
-0.1
-0.4
-0.4
-0.5
nitrogen source
Uridine (N)
-6.9
-0.7
+0.0
-1.1
-0.0
carbon source
D-Gluconic Acid (C)
-8.5
+0.1
-0.1
+0.1
-0.2
nitrogen source
Cytidine (N)
-9.1
+0.6
-0.1
+0.4
-0.1
nitrogen source
Thymidine (N)
-9.1
+0.5
+0.1
+0.2
-0.1
supernatant
RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
-8.1
+0.0
+0.1
+0.2
-0.1
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM
-6.8
+0.2
-0.4
-0.1
-0.7
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
-7.1
+0.3
-0.3
-0.1
-0.5
nitrogen source
L-Tryptophan (N)
-9.1
+0.1
+0.2
+0.7
+0.2
supernatant
RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
-8.2
-0.1
+0.2
+0.1
+0.3
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM
-8.1
+0.1
+0.0
+0.1
+0.3
nitrogen source
N-Acetyl-D-glucosamine (N)
-8.1
+0.1
+0.4
+0.6
-0.3
nitrogen source
L-Asparagine (N)
-7.5
-0.4
+0.2
+0.3
+0.2
carbon source
2-Deoxyadenosine 4 mM (C)
-7.5
+0.2
+0.2
+0.0
-0.2
nitrogen source
L-Histidine (N)
-7.8
+0.0
+0.2
+0.4
+0.0
stress
RCH2_defined_1percent_glucose with Chloride 400 mM
-6.4
-0.1
-0.7
-0.5
+0.7
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
-8.0
+0.6
+0.1
+0.1
+0.3
exudates
RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 0.25x
-7.7
+0.4
+0.3
-0.1
+0.2
carbon source
succinate (C)
-7.3
+0.3
-0.0
+0.4
-0.4
carbon source
D-Sorbitol (C)
-7.6
+0.3
-0.1
+0.5
+0.1
carbon source
Inosine (C)
-7.5
-0.1
+0.1
+0.8
-0.0
nitrogen source
L-Arginine (N)
-6.9
+0.4
-0.0
+0.5
-0.4
nitrogen source
Cytosine (N)
-7.1
+0.2
+0.2
+0.5
-0.1
nitrogen source
Ammonium chloride (N)
-7.2
+0.2
+0.1
+0.4
+0.2
nitrogen source
L-Isoleucine (N)
-7.1
+0.3
+0.1
+0.4
+0.1
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