Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS03875 and BWI76_RS03880 are separated by 284 nucleotidesBWI76_RS03880 and BWI76_RS03885 are separated by 118 nucleotidesBWI76_RS03885 and BWI76_RS03890 are separated by 201 nucleotidesBWI76_RS03890 and BWI76_RS03895 are separated by 10 nucleotides BWI76_RS03875: BWI76_RS03875 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 801,398 to 802,030 _RS03875 BWI76_RS03880: BWI76_RS03880 - homoprotocatechuate degradation operon regulator, HpaR, at 802,315 to 802,752 _RS03880 BWI76_RS03885: BWI76_RS03885 - hypothetical protein, at 802,871 to 804,085 _RS03885 BWI76_RS03890: BWI76_RS03890 - hypothetical protein, at 804,287 to 805,726 _RS03890 BWI76_RS03895: BWI76_RS03895 - reactive intermediate/imine deaminase, at 805,737 to 806,129 _RS03895
Group Condition BWI76_RS03875 BWI76_RS03880 BWI76_RS03885 BWI76_RS03890 BWI76_RS03895
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 -1.2 +0.4 -1.0 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -2.2 -0.1 -0.1 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -0.8 -0.3 -0.4 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.0 -1.2 -0.6 -0.7 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB +0.5 -2.9 -0.3 +0.4 +0.0
carbon source D-Alanine (C) +0.0 -1.9 -0.2 +0.2 -0.2
phage K. M5a1 KLEB26 MOI 0.1 +0.2 -0.8 -0.4 -0.1 -0.9
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.1 -1.6 +0.1 -0.6 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 -2.0 -0.1 -0.1 +0.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.1 -1.5 +0.2 -0.5 +0.0
carbon source L-Glutamine (C) -0.1 -1.8 -0.1 -0.0 +0.1
carbon source D,L-Malic Acid (C) -0.4 -1.7 +0.1 -0.0 +0.1
exudates RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x -0.2 -1.0 -0.0 -0.7 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 -2.3 +0.1 +0.9 -0.1
carbon source D,L-Malic Acid (C) +0.4 -1.9 -0.1 +0.3 -0.1
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB +1.1 -3.1 +0.3 +0.3 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -2.2 +0.8 +0.5 +0.1
stress Cobalt chloride 0.5 mM -1.3 -0.8 +0.2 +0.7 -0.1
phage KLEB26 MOI0.1 +0.4 -0.8 -0.7 +0.1 -0.2
carbon source D,L-Lactate (C) +0.3 -1.4 +0.2 +0.2 -0.0
nitrogen source nitrate (N) -0.3 -1.2 +0.4 -0.2 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 -1.5 +0.5 +0.4 +0.0
carbon source 2'-Deoxycytidine 10 mM (C) +0.5 -1.5 +0.6 +0.0 +0.2
nitrogen source Uridine (N) +0.3 -1.2 +0.2 +0.5 +0.2
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL +0.5 -0.9 -0.1 +0.7 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 -1.0 +1.1 -0.0 -0.2
phage KLEB29 MOI 1 +0.8 +0.7 -0.6 +0.1 -0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x -0.4 +0.8 +0.9 +0.1 -0.2
nitrogen source L-tyrosine (N) -0.3 +1.6 +0.2 +0.3 +0.4
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.3 +4.4 -0.4 -0.7 +0.1
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