Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS03860 and BWI76_RS03865 are separated by 1 nucleotidesBWI76_RS03865 and BWI76_RS03870 overlap by 4 nucleotidesBWI76_RS03870 and BWI76_RS03875 overlap by 4 nucleotidesBWI76_RS03875 and BWI76_RS03880 are separated by 284 nucleotides BWI76_RS03860: BWI76_RS03860 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 798,315 to 799,172 _RS03860 BWI76_RS03865: BWI76_RS03865 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, at 799,174 to 800,640 _RS03865 BWI76_RS03870: BWI76_RS03870 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 800,637 to 801,401 _RS03870 BWI76_RS03875: BWI76_RS03875 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 801,398 to 802,030 _RS03875 BWI76_RS03880: BWI76_RS03880 - homoprotocatechuate degradation operon regulator, HpaR, at 802,315 to 802,752 _RS03880
Group Condition BWI76_RS03860 BWI76_RS03865 BWI76_RS03870 BWI76_RS03875 BWI76_RS03880
rhizosphere rhizosphere sample 1; outgrowth in LB -0.3 -0.4 +0.2 +0.5 -2.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.1 -0.4 -0.4 -2.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 -0.1 -0.2 -0.3 -2.3
supernatant control Vogels_fungal_media; pH 5.5 -0.6 +0.0 -0.8 -0.8 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.6 +0.3 -1.0 -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.5 -0.3 -0.5 -2.2
stress Cobalt chloride 0.5 mM +0.1 -0.3 +0.1 -1.3 -0.8
phage K. M5a1 KLEB26 MOI 0.1 -0.5 -0.4 -0.5 +0.2 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 -0.4 -0.5 +0.0 -1.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 -0.3 -0.3 -0.0 -1.7
carbon source 2'-Deoxyinosine 5 mM (C) +0.3 +0.2 -0.7 -0.1 -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.4 -0.8 -0.2 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 -0.1 +0.3 +0.1 -2.0
carbon source D,L-Malic Acid (C) -0.0 +0.3 +0.4 -0.4 -1.7
carbon source L-Glutamine (C) +0.2 +0.4 +0.1 -0.1 -1.8
carbon source D-Alanine (C) +0.3 +0.1 +0.5 +0.0 -1.9
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB +0.4 +0.1 +0.7 +1.1 -3.1
carbon source D,L-Malic Acid (C) +0.0 +0.3 +0.4 +0.4 -1.9
carbon source 2'-Deoxycytidine 10 mM (C) +0.1 +0.4 -0.2 +0.5 -1.5
carbon source D,L-Lactate (C) +0.4 +0.1 -0.0 +0.3 -1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 -0.0 -0.3 +0.2 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.1 +0.7 +0.1 -1.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +0.1 +0.5 +0.2 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 -0.2 -0.3 +0.0 +1.5
mixed community LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL -0.2 +0.2 +0.2 -0.1 +1.5
stress Cobalt chloride 0.5 mM +0.3 +0.3 +0.0 +0.9 +0.8
phage KLEB17 MOI 0.1 +0.6 +0.5 +0.6 +0.4 +0.3
mixed community LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL +0.1 +0.4 +0.4 +0.2 +1.5
stress Sisomicin 0.008 mg/ml +0.5 +0.0 +0.8 +0.8 +0.6
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.1 +0.3 +0.0 -0.3 +4.4
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