Fitness for 5 genes in Klebsiella michiganensis M5al

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BWI76_RS03215	BWI76_RS03220	BWI76_RS03225	BWI76_RS03230	BWI76_RS03235
carbon source	a-Cyclodextrin (C)	-0.0	+0.1	-0.1	-1.1	-4.5
carbon source	a-Cyclodextrin (C)	+0.0	+0.1	+0.1	-1.1	-4.7
carbon source	D,L-Malic Acid (C)	+0.0	-0.0	-3.5	-0.2	-1.1
carbon source	D,L-Malic Acid (C)	+0.3	-0.0	-2.9	-0.1	-1.0
rhizosphere	rhizosphere EcoFAB sample 3; outgrowth in LB	-0.4	-0.1	+0.2	-1.7	-1.7
mixed community	LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	-0.1	-0.1	-3.0	-0.2	-0.3
carbon source	D-Alanine (C)	-0.0	-0.0	-2.4	-0.1	-1.0
carbon source	acetate (C)	-0.1	+0.0	-0.6	-0.1	-2.6
mixed community	Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	-0.4	+0.0	-2.0	-0.7	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	+0.1	-1.2	-0.3	-1.2
carbon source	D-Ribose (C)	+0.0	+0.0	-1.5	-0.0	-1.6
mixed community	LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL	-0.4	-0.1	-1.4	-0.6	-0.6
mixed community	LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	-0.3	-0.0	-1.8	-0.4	-0.3
carbon source	D-Xylose (C)	+0.2	+0.0	-1.0	-0.0	-2.2
carbon source	D-Alanine (C)	+0.0	+0.0	-2.1	+0.0	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	+0.0	-1.5	+0.0	-1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	+0.1	-1.3	-0.0	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	+0.3	-0.7	-0.9	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	+0.1	-1.6	-0.1	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	+0.1	-1.3	+0.1	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	+0.2	-1.1	-0.0	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	+0.3	-1.6	+0.3	-1.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.3	-1.2	-0.1	-1.4
mixed community	Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL	+0.0	+0.3	-1.6	-0.6	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.4	-1.0	+0.1	-1.3
mixed community	RCH2_defined_noCarbon with Mixed culture; Escherichia coli BW25113 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	-0.4	-0.1	+2.3	-0.5	-0.4
phage	Roth35v2	+0.2	+0.5	+0.3	+1.0	+1.1
r2a control	R2A control	-0.2	-0.0	+3.6	-0.2	-0.2
r2a control	R2A control	-0.1	+0.2	+3.7	-0.1	-0.1
r2a control	R2A control	+0.1	+0.1	+3.9	-0.2	-0.1