Fitness for 5 genes in Klebsiella michiganensis M5al

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BWI76_RS03165	BWI76_RS03170	BWI76_RS03175	BWI76_RS03180	BWI76_RS03185
nitrogen source	L-tyrosine (N)	+0.6	-0.6	-0.4	-0.7	-1.3
phage	KLEB31 MOI 1	+0.1	-0.2	-0.8	-1.2	-0.2
nitrogen source	L-Arginine (N)	+0.3	-1.0	-0.6	-0.7	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	-0.6	-0.4	-0.9	-0.2
mixed community	RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	-0.4	-1.4	+0.1	-0.5	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	-0.5	+0.5	-0.9	-0.1
phage	K. M5a1 KLEB26 MOI 0.1	+0.3	-1.1	-0.2	+0.1	-1.0
phage	KLEB28 MOI 1	-0.1	-0.8	+0.2	-0.6	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	-0.3	-0.4	-0.8	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	+0.3	-0.4	-1.3	+0.3
phage	KLEB1 MOI 10	-0.1	-0.0	+0.3	-1.6	-0.2
supernatant	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml	+0.1	-0.5	-0.7	-0.8	+0.3
nitrogen source	nitrate (N)	-0.3	+0.6	-0.8	-0.4	-0.6
phage	KLEB1 MOI 0.1	+0.3	-0.7	+0.2	-1.0	+0.0
nitrogen source	L-Threonine (N)	-0.4	-0.7	-0.1	+0.5	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.0	-0.6	+0.1	+0.8	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.7	-0.2	-0.4	+0.9
supernatant control	Vogels_fungal_media; pH 5.5	-0.2	+0.2	-0.2	-1.1	+0.7
phage	KLEB15 MOI 0.1	+0.4	-0.4	-0.5	-0.7	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.9	-0.3	-0.7	-0.3
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.4	-0.8	-0.5	+0.7	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.2	+0.7	+0.6	-1.5	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.4	+0.4	+0.9	-1.1
supernatant	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml	+0.3	-0.4	-0.1	+0.7	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.3	+0.3	+0.7	+1.0
supernatant	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x	+0.2	+0.7	+0.4	-0.3	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.3	-0.4	+0.8	+0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6	+0.2	+1.4	+0.0	+0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.0	+0.9	+0.5	+0.9	+0.1
carbon source	Gly-Glu (C)	+0.6	-0.2	+0.1	-0.0	+2.3