Fitness for 5 genes in Klebsiella michiganensis M5al

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BWI76_RS02915	BWI76_RS02920	BWI76_RS02925	BWI76_RS02930	BWI76_RS02935
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	+0.1	+0.1	+0.0	-4.7	-4.7
nitrogen fixation	D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days	-0.0	-0.3	-0.1	-2.0	-2.0
nitrogen fixation	D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days	-0.1	-0.4	-0.0	-1.7	-1.8
mixed community	RCH2_defined_Glucose_noNitrogen in Eppendorf tube with 0.1 mM glass beads, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF	-0.3	-0.0	+0.0	-0.9	-0.8
mixed community	LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL	-0.4	-1.0	-0.1	-0.4	-0.0
phage	KLEB20 MOI 0.1	-0.1	-1.2	-0.1	+0.1	-0.4
nitrogen source	D-Alanine (N)	-0.6	-0.9	+0.4	-0.5	+0.2
stress	Paraquat dichloride 0.1 mg/ml	-0.7	-0.2	-0.6	-0.1	+0.3
mixed community	RCH2_defined_Glucose_noNitrogen in Eppendorf tube with sand, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF	+0.1	-0.1	+0.4	-1.0	-0.6
phage	KLEB1 MOI 0.1	-0.2	+0.4	-0.5	-0.3	-0.5
stress	Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL	-0.4	+0.5	+0.1	-0.4	-0.5
supernatant	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml	+0.3	-0.4	+0.5	-0.1	-0.7
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x	-0.4	-0.6	-0.2	-0.1	+0.8
carbon source	D-Salicin (C)	+0.4	-0.7	-0.4	+0.4	-0.1
mixed community	Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	+0.3	+0.8	-0.1	-0.6	-0.7
micoeukaryotes	Tetrahymena sp., Mixed culture-1	+0.4	+0.2	+0.5	-0.9	-0.4
supernatant	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml	+0.1	+0.6	+0.3	-0.6	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+1.5	-0.1	-0.6	-0.1
stress	Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL	+0.3	+0.7	+0.3	-0.3	-0.4
stress	Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL	-0.1	+0.6	+0.5	+0.1	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.1	-0.3	+1.1	-0.1
mixed community	RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	-0.4	+0.5	+0.7	+0.2	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.8	-0.2	-0.4	+0.4
mixed community	RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	+0.3	+0.8	+0.4	-0.2	-0.2
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x	+0.2	+0.4	+0.7	+0.2	-0.3
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x	+0.1	+0.8	-0.2	+0.6	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.1	+0.2	+1.4	-0.1
nitrogen source	L-tyrosine (N)	+0.3	+0.5	+0.5	+0.6	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	+0.0	-0.4	+1.9	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.0	+0.2	+2.2	-0.2