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Fitness for 5 genes in
Klebsiella michiganensis M5al
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BWI76_RS01250 and BWI76_RS01255 are separated by 246 nucleotides
BWI76_RS01255 and BWI76_RS01260 are separated by 109 nucleotides
BWI76_RS01260 and BWI76_RS01265 are separated by 43 nucleotides
BWI76_RS01265 and BWI76_RS01270 are separated by 88 nucleotides
BWI76_RS01250: BWI76_RS01250 - threonine export protein RhtC, at 256,483 to 257,106
_RS01250
BWI76_RS01255: BWI76_RS01255 - homoserine/homoserine lactone efflux protein, at 257,353 to 257,973
_RS01255
BWI76_RS01260: BWI76_RS01260 - lysophospholipase L2, at 258,083 to 259,075
_RS01260
BWI76_RS01265: BWI76_RS01265 - sugar/pyridoxal phosphate phosphatase YigL, at 259,119 to 259,919
_RS01265
BWI76_RS01270: BWI76_RS01270 - hypothetical protein, at 260,008 to 260,907
_RS01270
Group
Condition
BWI76
_RS01250
BWI76
_RS01255
BWI76
_RS01260
BWI76
_RS01265
BWI76
_RS01270
stress
Paraquat dichloride 0.1 mg/ml
-0.7
+0.2
-0.3
-0.2
-1.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.0
-0.2
-0.5
+0.2
+0.2
phage
KLEB31 MOI 1
-0.5
-0.3
-0.1
+0.6
-0.6
mixed community
LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
-1.0
-0.1
-0.3
+0.7
-0.1
supernatant
Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
+0.1
-0.5
-0.5
-0.2
+0.7
supernatant
Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
-0.1
-0.4
-0.6
-0.1
+0.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
-0.2
+0.5
-0.6
-0.4
supernatant
LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
-0.2
+0.3
-0.6
-0.1
+0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
-0.1
-0.3
-0.3
+1.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
-0.5
+0.8
-0.1
-0.6
+0.6
phage
KLEB29 MOI 1
-0.4
+0.4
+0.3
+0.4
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.3
+0.2
+0.8
+0.3
carbon source
succinate (C)
+0.3
+0.2
-0.6
+0.6
+0.3
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
+0.6
+0.3
-0.5
+0.2
+0.3
mixed community
Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
+1.0
+0.2
+0.2
-0.1
-0.4
nitrogen source
L-Leucine (N)
+0.4
-0.1
+0.7
+0.4
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.9
+0.1
+0.3
-0.3
+0.4
nitrogen source
L-Lysine (N)
+0.5
+0.2
+0.3
+0.7
-0.2
phage
KLEB17 MOI 1
+0.6
+0.4
+0.9
-0.7
+0.4
stress
Sisomicin 0.008 mg/ml
+0.5
-0.0
+0.8
+0.5
+0.0
phage
KLEB25 MOI 0.1
+0.5
+0.4
+0.3
+0.4
+0.3
stress
Nickel (II) chloride 1.5 mM
+0.6
+0.2
+0.7
+0.1
+0.2
phage
KLEB20 MOI 0.1
+1.1
+0.2
+0.3
+0.3
-0.1
stress
Cobalt chloride 0.5 mM
+0.1
+0.5
+1.2
-0.2
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
+0.1
+0.4
+0.3
+0.6
phage
KLEB20 MOI 1
+0.6
+0.3
+0.7
+0.7
-0.3
phage
KLEB16 MOI 1
+0.7
+0.2
+0.3
+0.6
+0.4
phage
KLEB16 MOI 0.1
+0.4
+0.6
+0.2
+0.7
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
+0.3
+1.3
+0.9
-0.1
phage
KLEB16 MOI 10
+0.7
+0.5
+0.6
+0.5
+0.5
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