Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS01190 and BWI76_RS01195 are separated by 138 nucleotidesBWI76_RS01195 and BWI76_RS01200 are separated by 25 nucleotidesBWI76_RS01200 and BWI76_RS01205 overlap by 4 nucleotidesBWI76_RS01205 and BWI76_RS01210 overlap by 4 nucleotides BWI76_RS01190: BWI76_RS01190 - iron donor protein CyaY, at 244,672 to 244,992 _RS01190 BWI76_RS01195: BWI76_RS01195 - membrane protein, at 245,131 to 245,334 _RS01195 BWI76_RS01200: BWI76_RS01200 - diaminopimelate epimerase, at 245,360 to 246,184 _RS01200 BWI76_RS01205: BWI76_RS01205 - DUF484 family protein, at 246,181 to 246,888 _RS01205 BWI76_RS01210: BWI76_RS01210 - tyrosine recombinase XerC, at 246,885 to 247,787 _RS01210
Group Condition BWI76_RS01190 BWI76_RS01195 BWI76_RS01200 BWI76_RS01205 BWI76_RS01210
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -0.4 -0.5 -3.4 -1.9 -7.8
supernatant control Vogels_fungal_media; pH 5.5 -2.1 +0.0 -3.1 -1.3 -7.5
carbon source L-Glutamine (C) +0.1 -0.7 -3.8 -1.2 -7.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.0 -0.2 -3.1 -2.2 -7.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.0 -0.8 -2.7 -1.7 -6.6
supernatant control Vogels_fungal_media; pH 5.5 -0.2 -2.6 -3.1 -1.9 -4.9
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.0 -0.0 -3.2 -2.0 -7.6
carbon source D-Serine (C) +0.3 -1.4 -3.3 -0.7 -7.5
nitrogen source D-Alanine (N) -0.0 -0.5 -2.7 -1.8 -7.5
nitrogen source Glucuronamide (N) -1.1 +0.4 -3.5 -0.5 -7.6
nitrogen source L-Histidine (N) +0.1 +0.2 -4.0 -0.4 -8.2
nitrogen source N-Acetyl-D-glucosamine (N) -0.1 -0.0 -2.6 -1.3 -8.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.3 -0.5 -1.6 -2.1 -7.4
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.8 +0.1 -2.9 -0.7 -7.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.6 -0.2 -1.7 -1.3 -7.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 -0.7 -2.5 -1.7 -6.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 +0.1 -2.8 -1.0 -7.2
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +0.0 +0.2 -2.6 -1.6 -7.4
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X +0.5 +0.1 -2.8 -1.6 -7.6
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM +0.4 -0.6 -5.6 -0.9 -4.7
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X -0.3 -0.1 -2.1 -1.2 -7.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 -0.5 -2.5 -1.8 -6.4
carbon source succinate (C) -1.0 +0.1 -2.5 -0.3 -7.4
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.4 -0.4 -1.0 -2.0 -7.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.0 -1.6 +1.5 -1.7 -7.3
nitrogen source Thymine (N) +0.3 +1.3 -3.4 -0.2 -7.6
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB +3.1 -0.5 -1.6 -2.4 -7.5
nitrogen source L-Arginine (N) +1.2 -0.6 -1.8 +0.6 -7.7
stress Sisomicin 0.008 mg/ml +4.7 -2.1 -2.4 +1.4 -4.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +8.3 +0.3 +0.3 -0.4 -2.1
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BWI76_RS01190
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BWI76_RS01195
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BWI76_RS01210
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