Fitness for 5 genes in Klebsiella michiganensis M5al

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BWI76_RS01000	BWI76_RS01005	BWI76_RS01010	BWI76_RS01015	BWI76_RS01020
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-1.7	-0.2	+0.2	-0.4	N.D.
supernatant	Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	-1.7	-0.0	-0.2	-0.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.9	-1.0	+0.1	-0.3	N.D.
nitrogen source	Uridine (N)	-1.1	-0.3	+0.3	-0.6	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.5	-0.6	-0.0	+0.7	N.D.
rhizosphere	rhizosphere EcoFAB sample 3; outgrowth in LB	-1.5	+0.3	-0.9	+0.7	N.D.
nitrogen source	D-Alanine (N)	+0.0	-0.6	-0.9	+0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.2	+0.4	-0.1	-0.3	N.D.
nitrogen source	D-Serine (N)	-1.0	-0.4	+0.2	+0.3	N.D.
nitrogen source	L-Arginine (N)	-0.6	+0.4	-0.7	+0.2	N.D.
mixed community	RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	+0.4	-0.9	+0.5	-0.5	N.D.
phage	KLEB1 MOI 10	+0.6	-0.0	+0.4	-1.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.7	-0.4	+1.2	-0.2	N.D.
mixed community	Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	-0.6	-0.4	+0.6	+0.4	N.D.
mixed community	RCH2_defined_noCarbon with Mixed culture; Escherichia coli BW25113 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	+0.4	-0.6	+0.6	-0.2	N.D.
nitrogen source	Casamino Acids (N)	-0.8	+0.8	+0.3	-0.0	N.D.
carbon source	2'-Deoxycytidine 10 mM (C)	-0.7	+0.4	+0.2	+0.5	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.2	-0.2	-0.5	+0.1	N.D.
phage	KLEB1 MOI 10	+1.0	-0.3	+0.3	-0.2	N.D.
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x	+1.0	-0.1	+0.4	-0.4	N.D.
mixed community	LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	+0.8	+0.2	+0.4	-0.5	N.D.
nitrogen source	L-Phenylalanine (N)	+0.5	+0.9	-0.5	+0.1	N.D.
mixed community	RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	+1.1	-0.2	+0.4	-0.1	N.D.
supernatant	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml	-0.2	-0.2	+1.0	+0.7	N.D.
carbon source	Gly-Glu (C)	+0.3	-0.4	+1.1	+0.3	N.D.
mixed community	Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	+0.6	+0.1	+0.8	+0.4	N.D.
mixed community	RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	+0.4	+0.4	+0.6	+0.4	N.D.
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.4	+1.2	+0.7	+0.4	N.D.
supernatant	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x	+1.0	+0.2	+0.4	+0.5	N.D.
mixed community	Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	+1.0	+0.3	+1.0	+0.9	N.D.