Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS00285 and BWI76_RS00290 are separated by 101 nucleotidesBWI76_RS00290 and BWI76_RS00295 are separated by 12 nucleotidesBWI76_RS00295 and BWI76_RS00300 overlap by 4 nucleotidesBWI76_RS00300 and BWI76_RS00305 are separated by 3 nucleotides BWI76_RS00285: BWI76_RS00285 - D-ribose ABC transporter substrate-binding protein, at 59,243 to 60,133 _RS00285 BWI76_RS00290: BWI76_RS00290 - Ribokinase (EC 2.7.1.15) (from data), at 60,235 to 61,164 _RS00290 BWI76_RS00295: BWI76_RS00295 - transcriptional regulator RbsR, at 61,177 to 62,160 _RS00295 BWI76_RS00300: BWI76_RS00300 - MFS transporter, at 62,157 to 63,554 _RS00300 BWI76_RS00305: BWI76_RS00305 - GntR family transcriptional regulator, at 63,558 to 64,268 _RS00305
Group Condition BWI76_RS00285 BWI76_RS00290 BWI76_RS00295 BWI76_RS00300 BWI76_RS00305
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB +0.1 -2.2 -5.0 -0.0 +0.7
carbon source D-Ribose (C) -3.4 -3.1 +2.2 -0.3 -0.0
phage KLEB1 MOI 10 -0.6 -0.8 -0.4 -1.5 -1.0
carbon source D-Ribose (C) -2.4 -3.5 +1.7 -0.0 -0.1
stress Cobalt chloride 0.5 mM -0.5 +0.3 -0.2 +0.2 -1.4
stress Cobalt chloride 0.5 mM +1.0 +0.1 +0.8 -0.4 -1.4
stress Sisomicin 0.008 mg/ml +0.5 +0.4 +1.1 +0.0 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.3 +1.6 -0.3 -0.1
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X +0.2 -0.1 +1.6 +0.3 -0.5
carbon source succinate (C) +0.2 +0.6 +0.3 -0.3 +1.0
phage KLEB31 MOI 1 +0.2 +0.7 +0.2 -0.1 +1.3
phage KLEB24 MOI 1 +0.3 +0.6 +0.6 +0.1 +0.8
rhizosphere rhizosphere sample 1; outgrowth in LB -0.6 +1.0 +1.9 +0.1 +0.0
phage K. M5a1 KLEB22 MOI 0.1 +0.4 +1.0 +0.8 -0.0 +0.4
phage K. M5a1 KLEB22 MOI 10 +0.1 +1.1 +0.5 +0.3 +0.5
phage K. M5a1 KLEB22 MOI 10 -0.1 +1.2 +0.8 +0.4 +0.3
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL +0.4 +0.9 +0.8 +0.4 +0.2
phage K. M5a1 KLEB23 MOI 0.1 +0.3 +1.0 +0.9 +0.2 +0.2
carbon source D,L-Malic Acid (C) +0.3 +1.1 +1.4 -0.1 -0.0
phage KLEB29 MOI 1 +0.4 +0.5 +0.7 +0.1 +0.9
carbon source 2'-Deoxycytidine 5 mM (C) +0.4 +0.3 +0.6 +0.2 +1.1
phage K. M5a1 KLEB23 MOI 0.1 +0.6 +0.9 +1.1 +0.2 +0.2
phage KLEB29 MOI 1 +0.3 +0.8 +0.7 +0.3 +0.7
phage K. M5a1 KLEB22 MOI 1 +0.5 +1.2 +0.7 +0.4 +0.3
phage K. M5a1 KLEB23 MOI 1 -0.0 +1.2 +1.0 +0.4 +0.5
carbon source L-Glutamine (C) +0.1 +1.4 +1.8 -0.2 +0.3
phage K. M5a1 KLEB22 MOI 1 +0.6 +1.3 +1.1 +0.3 +0.3
carbon source D,L-Malic Acid (C) +0.4 +1.3 +1.8 +0.0 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.8 -0.1 +1.2 +0.1 +0.8
phage K. M5a1 KLEB23 MOI 1 +0.9 +1.5 +1.1 +0.3 +0.5
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BWI76_RS00285
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