Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS00275 and BWI76_RS00280 are separated by 5 nucleotidesBWI76_RS00280 and BWI76_RS00285 are separated by 27 nucleotidesBWI76_RS00285 and BWI76_RS00290 are separated by 101 nucleotidesBWI76_RS00290 and BWI76_RS00295 are separated by 12 nucleotides BWI76_RS00275: BWI76_RS00275 - ribose ABC transporter ATP-binding protein RbsA, at 56,739 to 58,244 _RS00275 BWI76_RS00280: BWI76_RS00280 - ribose ABC transporter permease, at 58,250 to 59,215 _RS00280 BWI76_RS00285: BWI76_RS00285 - D-ribose ABC transporter substrate-binding protein, at 59,243 to 60,133 _RS00285 BWI76_RS00290: BWI76_RS00290 - Ribokinase (EC 2.7.1.15) (from data), at 60,235 to 61,164 _RS00290 BWI76_RS00295: BWI76_RS00295 - transcriptional regulator RbsR, at 61,177 to 62,160 _RS00295
Group Condition BWI76_RS00275 BWI76_RS00280 BWI76_RS00285 BWI76_RS00290 BWI76_RS00295
carbon source D-Ribose (C) -2.5 -2.9 -2.4 -3.5 +1.7
carbon source D-Ribose (C) -2.3 -1.9 -3.4 -3.1 +2.2
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB -0.4 +0.0 +0.1 -2.2 -5.0
phage KLEB1 MOI 10 -0.8 -0.6 -0.6 -0.8 -0.4
phage KLEB1 MOI 0.1 -0.7 -0.8 -0.6 +0.1 -0.4
nitrogen source Gly-DL-Asp (N) -0.5 -0.6 +0.4 +0.4 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.0 +1.5 -0.0 -0.5 -0.5
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.0 +1.1 +0.5 -0.5 -0.5
stress Cephalothin 0.16 mg/ml +0.5 +0.5 +0.7 -0.3 -0.7
stress Cephalothin 0.16 mg/ml +0.7 +0.6 +0.8 -0.7 -0.5
stress Sisomicin 0.008 mg/ml -0.1 -0.5 +0.5 +0.7 +0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 +0.6 -0.1 +0.3 +1.6
rhizosphere rhizosphere sample 1; outgrowth in LB -0.3 +0.2 -0.6 +1.0 +1.9
phage KLEB16 MOI 0.1 +0.2 +0.4 +0.7 +0.8 +0.4
phage KLEB29 MOI 0.1 +0.4 +0.4 +0.4 +0.8 +0.5
carbon source D,L-Malic Acid (C) -0.2 +0.0 +0.3 +1.1 +1.4
phage K. M5a1 KLEB22 MOI 0.1 +0.2 +0.3 +0.4 +1.0 +0.8
phage K. M5a1 KLEB22 MOI 10 +0.7 +0.2 -0.1 +1.2 +0.8
phage K. M5a1 KLEB22 MOI 10 +0.6 +0.5 +0.1 +1.1 +0.5
phage KLEB29 MOI 1 +0.5 +0.7 +0.4 +0.5 +0.7
carbon source L-Glutamine (C) -0.0 -0.1 +0.1 +1.4 +1.8
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 -0.1 +1.8 -0.1 +1.2
phage KLEB29 MOI 1 +0.6 +0.9 +0.3 +0.8 +0.7
phage K. M5a1 KLEB23 MOI 1 +0.6 +0.6 -0.0 +1.2 +1.0
phage K. M5a1 KLEB23 MOI 0.1 +0.7 +0.4 +0.3 +1.0 +0.9
phage K. M5a1 KLEB22 MOI 1 +0.6 +0.4 +0.5 +1.2 +0.7
phage K. M5a1 KLEB23 MOI 0.1 +0.4 +0.5 +0.6 +0.9 +1.1
carbon source D,L-Malic Acid (C) +0.0 +0.1 +0.4 +1.3 +1.8
phage K. M5a1 KLEB23 MOI 1 +0.7 +0.2 +0.9 +1.5 +1.1
phage K. M5a1 KLEB22 MOI 1 +0.6 +0.9 +0.6 +1.3 +1.1
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BWI76_RS00275
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BWI76_RS00280
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BWI76_RS00295
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