Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS00065 and BWI76_RS00070 are separated by 326 nucleotidesBWI76_RS00070 and BWI76_RS00075 are separated by 50 nucleotidesBWI76_RS00075 and BWI76_RS00080 overlap by 4 nucleotidesBWI76_RS00080 and BWI76_RS00085 overlap by 4 nucleotides BWI76_RS00065: BWI76_RS00065 - MurR/RpiR family transcriptional regulator, at 12,271 to 13,152 _RS00065 BWI76_RS00070: BWI76_RS00070 - MFS transporter, at 13,479 to 14,969 _RS00070 BWI76_RS00075: BWI76_RS00075 - N-acetylmannosamine-6-phosphate 2-epimerase, at 15,020 to 15,709 _RS00075 BWI76_RS00080: BWI76_RS00080 - N-acetylmannosamine kinase, at 15,706 to 16,581 _RS00080 BWI76_RS00085: BWI76_RS00085 - hypothetical protein, at 16,578 to 17,042 _RS00085
Group Condition BWI76_RS00065 BWI76_RS00070 BWI76_RS00075 BWI76_RS00080 BWI76_RS00085
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.1 +0.1 -0.9 -0.9 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.1 +0.1 -0.9 -0.0 -0.4
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB -3.8 +0.5 +0.3 -0.0 -0.0
exudates RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x -1.7 -0.3 -0.4 -0.9 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.8 -0.1 -0.2 +0.1 +0.1
mixed community LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL -1.0 -0.0 -0.6 -1.4 +0.4
carbon source D-Alanine (C) -1.8 -0.1 -0.5 +0.2 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.5 +0.1 -0.7 -0.3 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.5 +0.1 -1.1 -0.2 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.1 +0.2 -0.1 -0.1 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.0 -0.0 +0.5 +0.4 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -2.2 +0.1 +0.5 +0.2 -0.2
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.9 +0.1 +0.6 -0.1 -0.9
nitrogen source Gly-DL-Asp (N) +0.2 +0.1 +0.8 -1.5 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 +0.1 +1.1 -1.5 +0.2
mixed community RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x -0.8 +0.2 -0.0 -0.8 +0.9
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -1.9 +0.0 +0.6 +0.6 +0.1
stress RCH2_defined_1percent_glucose with Chloride 600 mM -1.9 +0.2 +0.1 +0.7 +0.4
carbon source 2'-Deoxyinosine 10 mM (C) -1.7 +0.1 +0.3 +1.0 +0.0
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -1.4 +0.2 +0.4 +0.9 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 -0.2 -0.4 -0.0 +1.8
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -0.2 -0.3 +1.1 +0.7
mixed community LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL -1.0 -0.2 +1.2 +0.4 +0.5
mixed community RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x -0.7 -0.3 +0.8 +0.9 +0.4
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.9 +0.2 +1.3 -0.5 +1.0
phage KLEB29 MOI 1 +0.6 +0.6 +1.1 -0.5 +0.1
phage K. M5a1 KLEB22 MOI 10 +0.9 +0.3 +0.7 -0.4 +0.8
phage K. M5a1 KLEB23 MOI 1 +0.9 +0.4 +0.7 +0.6 +0.4
phage K. M5a1 KLEB23 MOI 1 +1.6 +0.1 +0.9 -0.0 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 +0.1 -0.0 +0.6 +3.3
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