Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS00025 and BWI76_RS00030 are separated by 111 nucleotidesBWI76_RS00030 and BWI76_RS00035 are separated by 15 nucleotidesBWI76_RS00035 and BWI76_RS00040 overlap by 37 nucleotidesBWI76_RS00040 and BWI76_RS00045 are separated by 2 nucleotides BWI76_RS00025: BWI76_RS00025 - hypothetical protein, at 6,483 to 6,673 _RS00025 BWI76_RS00030: BWI76_RS00030 - 50S ribosomal protein L34, at 6,785 to 6,925 _RS00030 BWI76_RS00035: BWI76_RS00035 - ribonuclease P protein component, at 6,941 to 7,300 _RS00035 BWI76_RS00040: BWI76_RS00040 - membrane protein insertion efficiency factor YidD, at 7,264 to 7,521 _RS00040 BWI76_RS00045: BWI76_RS00045 - membrane protein insertase YidC, at 7,524 to 9,170 _RS00045
Group Condition BWI76_RS00025 BWI76_RS00030 BWI76_RS00035 BWI76_RS00040 BWI76_RS00045
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -4.6 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -4.5 N.D. N.D. N.D. N.D.
nitrogen source nitrate (N) -4.2 N.D. N.D. N.D. N.D.
nitrogen source D-Serine (N) -3.9 N.D. N.D. N.D. N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -3.3 N.D. N.D. N.D. N.D.
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days -3.2 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.2 N.D. N.D. N.D. N.D.
stress Sisomicin 0.008 mg/ml -3.0 N.D. N.D. N.D. N.D.
carbon source pyruvate (C) -2.7 N.D. N.D. N.D. N.D.
phage K. M5a1 KLEB10 MOI 1 -2.7 N.D. N.D. N.D. N.D.
stress Paraquat dichloride 0.1 mg/ml -2.7 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.6 N.D. N.D. N.D. N.D.
nitrogen source Adenosine (N) -2.5 N.D. N.D. N.D. N.D.
nitrogen source L-Serine (N) -2.5 N.D. N.D. N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x -2.4 N.D. N.D. N.D. N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -2.4 N.D. N.D. N.D. N.D.
carbon source a-Cyclodextrin (C) -2.4 N.D. N.D. N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM -2.3 N.D. N.D. N.D. N.D.
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +2.2 N.D. N.D. N.D. N.D.
stress Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL +2.2 N.D. N.D. N.D. N.D.
stress Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL +2.2 N.D. N.D. N.D. N.D.
exudates RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x +2.2 N.D. N.D. N.D. N.D.
phage KLEB29 MOI 1 +2.2 N.D. N.D. N.D. N.D.
phage KLEB15 MOI 0.1 +2.3 N.D. N.D. N.D. N.D.
phage KLEB24 MOI 1 +2.5 N.D. N.D. N.D. N.D.
phage KLEB29 MOI 0.1 +2.7 N.D. N.D. N.D. N.D.
phage KLEB15 MOI 0.1 +2.7 N.D. N.D. N.D. N.D.
stress Chloramphenicol 0.001 mg/ml +2.8 N.D. N.D. N.D. N.D.
phage KLEB29 MOI 1 +2.9 N.D. N.D. N.D. N.D.
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL +3.4 N.D. N.D. N.D. N.D.
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